CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99265
KRH45736

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26990.1	KRG99265	AT1G24050.1	21798944
AT4G26990.1	KRH45736	AT1G24050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P23200_001	Banana	plastid	18.47	39.26
KRG98802	Soybean	nucleus	60.28	34.95
Os04t0625900-01	Rice	plastid	26.83	17.04
VIT_19s0090g00300.t01	Wine grape	nucleus	33.8	16.87
Zm00001d002243_P004	Maize	mitochondrion	24.04	15.2
PGSC0003DMT400057491	Potato	cytosol, plasma membrane, plastid	26.83	15.19
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	22.3	15.09
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	26.48	15.02
AT5G54920.2	Thale cress	plastid	27.18	14.94
AT4G26990.1	Thale cress	plasma membrane	24.39	14.77
Bra026388.1-P	Field mustard	nucleus	24.04	14.74
TraesCS2A01G473100.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	22.65	14.67
CDY29262	Canola	nucleus	23.69	14.56
CDY46672	Canola	nucleus	22.3	14.51
CDX89288	Canola	nucleus	23.34	14.38
EES11463	Sorghum	golgi, mitochondrion, plasma membrane, plastid	22.65	14.25
TraesCS2D01G472800.1	Wheat	endoplasmic reticulum	17.07	11.14
HORVU2Hr1G106820.1	Barley	cytosol	16.38	10.71
KRH23258	Soybean	cytosol	23.34	10.47
KRH10084	Soybean	nucleus	23.0	10.28
KRH06143	Soybean	cytosol, plastid	21.25	9.71
KRH47566	Soybean	plastid	21.25	9.65
KRH46148	Soybean	plastid	3.48	4.67
CDX92788	Canola	plastid	1.74	3.03

Protein Annotations

EMBL:ACUP02005325	EnsemblPlants:KRH46146	EnsemblPlantsGene:GLYMA_08G3151002	InterPro:SM_dom_ATX	PANTHER:PTHR12854	PANTHER:PTHR12854:SF12
PFAM:PF14438	PFscan:PS51257	ProteinID:KRH46144.1	ProteinID:KRH46145.1	ProteinID:KRH46146	ProteinID:KRH46146.1
SEG:seg	UniParc:UPI0006ED4F26	UniProt:A0A0R0IVD7	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr8:+:43502202..43507654

Molecular Weight (calculated)

30154.3 Da

IEP (calculated)

5.031

GRAVY (calculated)

-0.610

Length

287 amino acids

Sequence
(BLAST)

001: MDCRNRDSIT ENHTSSSSSS SSSSSSSSSS SCDSLSEALL FTTMCIVGHP VDVHVKDGSV YSGIFHTASV HADYGIVLKK ARMTKKGKGN SNVGNEGFVD
101: TLVILSSDLV QVVAKGVIFP ADGVGGNITG DDEEAVAHNV CSESLTCEVE NHTGPLMGAK QVNQLRQAGD DKSNSKGKTD DCGQKSESVN EKIDEKTQNL
201: NSSHESQEVA VEHGSTDRTS SPSDNGLLCN NAPASVKAND RNSERSTSAD SVSKNLTQGV DIIQDSQPAR SIEISAPRGT DSTRNAK

Best Arabidopsis Sequence Match ( AT5G54920.1 )
(BLAST)

001: MAIAKKLENE ISRSSPSSSS SSLNEALLIS TMCIIGLQVH VHINDGSVFS GIFYTVSLEN EFSIVLKNAK LTKKGRSKSN VESGKIVETL VILSSNIVQI
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDENKYHP SSLNHQRQAG VRILKNSKKI
201: TDVHQEDNVE ARSSSCSLDN MSERVKPIEQ EKMPEPSSNG FHDATERPSS TENSSSQSTT VDENSEVSLV LVVSTNSLPP TQATDPDKKA KEFKLNPGAK
301: TFSPSLAKRL TSAHAGMTPV VANMGYVPSN TPMLPVPEAV QPEIGISPFL SHASSPSKFV PYTNLATGNA GGGSHFPQHM VGPTINRGQP HRFTTQYHSV
401: QPTPMLVNPN PQVMVGRSGQ LMYMQPISQD LVQGAPHNSH LPPRPLFTPQ QFQYPKHQSL IATGQPMHLY APQPFAANGH QPYTVMPTDI PVMQSPFPIN
501: RAMPIPVPNG FYGTKFL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G54920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.