Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 3
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6B01G338900.1 | |
| TraesCS6D01G288600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | TraesCS6B01G338900.1 | AT1G24050.1 | 21798944 |
| AT4G26990.1 | TraesCS6D01G288600.1 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 89.84 | 90.45 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 80.59 | 81.32 |
| Os04t0625900-01 | Rice | plastid | 56.43 | 55.31 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 55.3 | 53.73 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 51.24 | 53.54 |
| Zm00001d002243_P004 | Maize | mitochondrion | 54.18 | 52.86 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 12.19 | 40.0 |
| KRH46148 | Soybean | plastid | 15.58 | 32.24 |
| KRG98802 | Soybean | nucleus | 29.57 | 26.46 |
| CDX92788 | Canola | plastid | 9.48 | 25.45 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 32.28 | 24.87 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 28.44 | 24.85 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 27.99 | 24.51 |
| CDY46672 | Canola | nucleus | 23.48 | 23.58 |
| CDY29262 | Canola | nucleus | 24.38 | 23.13 |
| CDX89288 | Canola | nucleus | 23.93 | 22.75 |
| KRH46146 | Soybean | nucleus, plastid | 14.67 | 22.65 |
| Bra026388.1-P | Field mustard | nucleus | 23.48 | 22.22 |
| AT4G26990.1 | Thale cress | plasma membrane | 23.7 | 22.15 |
| AT5G54920.2 | Thale cress | plastid | 24.83 | 21.07 |
| TraesCS6A01G022300.1 | Wheat | nucleus | 13.54 | 10.87 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G473100.2 | EnsemblPlantsGene:TraesCS2A01G473100 | InterPro:Ataxin-2_C | InterPro:SM_dom_ATX | PANTHER:PTHR12854 | PANTHER:PTHR12854:SF12 |
| PFAM:PF07145 | PFAM:PF14438 | SEG:seg | SignalP:SignalP-noTM | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr2A:+:714333183..714338832
Molecular Weight (calculated)
46316.8 Da
IEP (calculated)
9.874
GRAVY (calculated)
-0.014
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPKKAKAA PAPAPPAVCE ALLLATVCMV GLPVEVQVRD GSAYAGVFHT ASLDAGYGVV LKKARKIANG KDNANLVLGA FVDTLVVLPD DLVQVIAKDF
101: SLATKDISKT SACDVVAASG LTQPQTSHLG DPKASRQVEK CSRLCQNSDN PTGKIAPMNS NAANVCSPIE HIVPNWNAIP TSADIGSKEG NVVNSVLATP
201: VVASNVKTSQ PINNSSIKAV MSSKTTAKES KLNPHAKVFA PSFASSRPVL AAASPVNPNY ISNSVSGVPT GVPVFQTHSH PGSSSLSSKV VHYNNLAPGN
301: FGMSPQYVQS VVGHNVGRLD PARLGTPYHP LQVGSTYISP SPQPMVDGKF SPVVYVHPVS QDAMRGTPVM SQVWPRPLLL NSHQGSLQKF QAGTAPFFGA
401: PPVMATGNLP MVMPSPATLV QPFQAIHPIM VPSATSMYPG KYM
101: SLATKDISKT SACDVVAASG LTQPQTSHLG DPKASRQVEK CSRLCQNSDN PTGKIAPMNS NAANVCSPIE HIVPNWNAIP TSADIGSKEG NVVNSVLATP
201: VVASNVKTSQ PINNSSIKAV MSSKTTAKES KLNPHAKVFA PSFASSRPVL AAASPVNPNY ISNSVSGVPT GVPVFQTHSH PGSSSLSSKV VHYNNLAPGN
301: FGMSPQYVQS VVGHNVGRLD PARLGTPYHP LQVGSTYISP SPQPMVDGKF SPVVYVHPVS QDAMRGTPVM SQVWPRPLLL NSHQGSLQKF QAGTAPFFGA
401: PPVMATGNLP MVMPSPATLV QPFQAIHPIM VPSATSMYPG KYM
001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
Arabidopsis Description
AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.