CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid

Predictor Summary:

nucleus 2
plastid 2
golgi 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05545

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26990.1	EES05545	AT1G24050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002243_P004	Maize	mitochondrion	80.26	80.62
TraesCS2A01G473100.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	53.73	55.3
Os04t0625900-01	Rice	plastid	52.41	52.88
TraesCS2D01G472800.1	Wheat	endoplasmic reticulum	48.9	50.68
HORVU2Hr1G106820.1	Barley	cytosol	45.83	47.61
GSMUA_Achr3P23200_001	Banana	plastid	11.84	40.0
KRH46148	Soybean	plastid	15.79	33.64
KRG98802	Soybean	nucleus	29.17	26.87
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	28.29	25.49
CDX92788	Canola	plastid	9.21	25.45
CDY46672	Canola	nucleus	24.56	25.4
PGSC0003DMT400057491	Potato	cytosol, plasma membrane, plastid	28.07	25.25
VIT_19s0090g00300.t01	Wine grape	nucleus	30.92	24.52
Bra026388.1-P	Field mustard	nucleus	23.25	22.65
KRH46146	Soybean	nucleus, plastid	14.25	22.65
AT4G26990.1	Thale cress	plasma membrane	23.25	22.36
CDX89288	Canola	nucleus	22.37	21.89
CDY29262	Canola	nucleus	22.37	21.84
AT5G54920.2	Thale cress	plastid	23.03	20.11
OQU84946	Sorghum	nucleus	15.57	11.74

Protein Annotations

MapMan:35.2	EntrezGene:8066819	InterPro:Ataxin-2_C	UniProt:C5YG86	EnsemblPlants:EES11463	ProteinID:EES11463
ProteinID:EES11463.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0010494
GO:GO:0010603	GO:GO:0016043	GO:GO:0034063	PFAM:PF07145	PFAM:PF14438	PANTHER:PTHR12854
PANTHER:PTHR12854:SF12	InterPro:SM_dom_ATX	EnsemblPlantsGene:SORBI_3006G222500	unigene:Sbi.7065	UniParc:UPI0001A86FE4	RefSeq:XP_002447135.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:56885007..56889932

Molecular Weight (calculated)

47404.2 Da

IEP (calculated)

10.004

GRAVY (calculated)

-0.049

Length

456 amino acids

Sequence
(BLAST)

001: MARPRKAKPP PPPSPPKAAA PSIAEALLLA TVCMVGLPVE VRVRDGSAYA GVLHTACVDA GYGVVLKKAK KIANGKGDAN LSLGSFVDTL VVHPDDLVQV
101: IAKGLSLPLK GVCKPLDSNM VAASGSLKPQ TSHANDPKMS KTGNISPLTQ PENCASVGLE KNTSVKKNGQ NSGCTTSLSS STGHVRPCFS VNGVSGSATM
201: VPKIDVSSSA IAAPVVASDV KSSQPANNSV TKIVTSSKTA AKEFKLNPCA KVFSPSFASS KQVLAATTAP VDTYYISHSA PEVPMGVPVY ESRSVSGVSP
301: LSNKVHYSNL SPANYAISPQ YVQSIVGHNA SRLDPARVGT PYHPMQVGAT YTTPSPQPVM TGKFSPVVYV QPVPQEAMHG TPLGFQGWPR PVLLNSYQPS
401: MQKFQGNTPV YLAPPVMATG NLPLVVPSPA PLVQPFQAIH PIMVPAASSM APGKYM

Best Arabidopsis Sequence Match ( AT4G26990.1 )
(BLAST)

001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP

Arabidopsis Description

AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.