Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | CDY16248 | AT1G24050.1 | 21798944 |
| AT4G26990.1 | CDY60798 | AT1G24050.1 | 21798944 |
| AT4G26990.1 | CDY68732 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026388.1-P | Field mustard | nucleus | 93.15 | 92.95 |
| CDX89288 | Canola | nucleus | 92.29 | 92.49 |
| CDX92788 | Canola | plastid | 28.05 | 79.39 |
| CDY46672 | Canola | nucleus | 70.24 | 74.38 |
| AT4G26990.1 | Thale cress | plasma membrane | 65.1 | 64.14 |
| CDX92787 | Canola | cytosol, nucleus, plastid | 24.2 | 42.16 |
| KRH46148 | Soybean | plastid | 17.13 | 37.38 |
| KRG98802 | Soybean | nucleus | 32.98 | 31.11 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 34.9 | 28.35 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 8.14 | 28.15 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 30.19 | 27.81 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 29.76 | 27.47 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 23.13 | 24.38 |
| KRH46146 | Soybean | nucleus, plastid | 14.56 | 23.69 |
| Os04t0625900-01 | Rice | plastid | 22.91 | 23.67 |
| Zm00001d002243_P004 | Maize | mitochondrion | 22.7 | 23.35 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 20.98 | 23.11 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 21.84 | 22.37 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 19.91 | 21.14 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 19.27 | 20.5 |
| CDY08218 | Canola | cytosol | 16.06 | 13.84 |
| CDY33083 | Canola | nucleus | 17.13 | 13.45 |
| CDY26136 | Canola | cytosol | 15.2 | 13.37 |
| CDY51396 | Canola | cytosol | 16.7 | 13.11 |
| CDY33254 | Canola | extracellular | 17.77 | 12.97 |
| CDY39090 | Canola | cytosol | 15.63 | 11.08 |
| CDX82502 | Canola | nucleus | 18.2 | 8.28 |
| CDX75744 | Canola | golgi, plastid, vacuole | 17.99 | 7.4 |
Protein Annotations
| EnsemblPlants:CDY29262 | EnsemblPlantsGene:GSBRNA2T00042198001 | Gene3D:2.30.30.100 | InterPro:LSM_dom_sf | InterPro:SM_dom_ATX | PANTHER:PTHR12854 |
| PANTHER:PTHR12854:SF12 | PFAM:PF14438 | ProteinID:CDY29262 | ProteinID:CDY29262.1 | SEG:seg | SUPFAM:SSF50182 |
| UniParc:UPI0004EE3A63 | UniProt:A0A078GVV3 | MapMan:35.2 | : | : | : |
Description
BnaC01g19140DBnaC01g19140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVV3]
Coordinates
chrLK032234:-:85042..87892
Molecular Weight (calculated)
50185.7 Da
IEP (calculated)
8.802
GRAVY (calculated)
-0.332
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYERKLEDD KNSTLLIATM CIIGSQVHVH VKDGSVFSGL FYTASVDNGF GIVLKNAKIT KKGKSKANVA SGTVVETLVI TSSNIVQIVA EGVSLPSNVT
101: GNYEVANVGS VTETLPSEPR FSAANKSKNN CFEGRRNHHF RRAGAKILNP SEKVPDVRPL DNVDIQSSSS SLDSMSERVK PIEEDKLVME PLSNGCHDAA
201: ERPSSSDNSS PQSTAVDETS GLWQGVEAPP NEPAPIQAVK KAKEFKLNPE AKTFSPSYTK RLSPAPTAMP DIGNVAYIPN NTPMLHVPEA VYPNLGNNPY
301: MPQTSPSSKF VPYGNLTAGN AVGVPFPQHM IGPTVNRAQP QTFTSPYQSV QASPMFVNPN PQVLVARSGQ FVFAQPLSQN LVQGTPPLPP PMLSRPLPPA
401: QHVQYLKHQG VVASGQPLQL CVSQPFTTAG LQPYSVPAQF PVMQPPFPTN QPMPVAVPNG FFGTFHK
101: GNYEVANVGS VTETLPSEPR FSAANKSKNN CFEGRRNHHF RRAGAKILNP SEKVPDVRPL DNVDIQSSSS SLDSMSERVK PIEEDKLVME PLSNGCHDAA
201: ERPSSSDNSS PQSTAVDETS GLWQGVEAPP NEPAPIQAVK KAKEFKLNPE AKTFSPSYTK RLSPAPTAMP DIGNVAYIPN NTPMLHVPEA VYPNLGNNPY
301: MPQTSPSSKF VPYGNLTAGN AVGVPFPQHM IGPTVNRAQP QTFTSPYQSV QASPMFVNPN PQVLVARSGQ FVFAQPLSQN LVQGTPPLPP PMLSRPLPPA
401: QHVQYLKHQG VVASGQPLQL CVSQPFTTAG LQPYSVPAQF PVMQPPFPTN QPMPVAVPNG FFGTFHK
001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
Arabidopsis Description
AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.