CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69443
CDX85500
CDY28659
CDY38105
CDY67252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	CDX69443	AT5G16560.1	21798944
AT1G54170.1	CDX85500	AT5G16560.1	21798944
AT1G54170.1	CDY28659	AT5G16560.1	21798944
AT1G54170.1	CDY38105	AT5G16560.1	21798944
AT1G54170.1	CDY67252	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51396	Canola	cytosol	92.1	92.1
Bra037969.1-P	Field mustard	cytosol	89.08	89.23
CDY08218	Canola	cytosol	63.87	70.11
CDY26136	Canola	cytosol	61.85	69.3
AT1G54170.1	Thale cress	nucleus	62.52	63.37
CDY33254	Canola	extracellular	51.76	48.12
CDY39090	Canola	cytosol	49.41	44.61
VIT_09s0002g01560.t01	Wine grape	nucleus	41.68	39.3
KRH10084	Soybean	nucleus	41.68	38.63
KRH23258	Soybean	cytosol	41.18	38.28
KRH06143	Soybean	cytosol, plastid	40.17	38.06
KRH47566	Soybean	plastid	40.0	37.66
Solyc06g062860.2.1	Tomato	cytosol	38.82	37.08
Solyc03g121950.2.1	Tomato	plastid	38.99	36.65
TraesCS6A01G022300.1	Wheat	nucleus	32.6	35.14
TraesCS6B01G028800.1	Wheat	nucleus	34.62	34.8
OQU84946	Sorghum	nucleus	35.13	34.55
TraesCS6D01G024600.2	Wheat	nucleus	33.61	34.01
GSMUA_Achr6P06300_001	Banana	mitochondrion	36.81	33.69
Os02t0480900-01	Rice	nucleus	33.45	33.67
PGSC0003DMT400012530	Potato	nucleus	11.09	32.67
Zm00001d016496_P004	Maize	cytosol, plastid	35.46	32.31
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	34.29	31.68
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	33.78	31.65
GSMUA_Achr7P11380_001	Banana	mitochondrion	33.45	31.29
CDX82502	Canola	nucleus	44.2	25.63
CDX92787	Canola	cytosol, nucleus, plastid	10.59	23.51
CDX75744	Canola	golgi, plastid, vacuole	44.54	23.35
CDY46672	Canola	nucleus	12.94	17.46
CDX89288	Canola	nucleus	13.61	17.38
CDY29262	Canola	nucleus	13.45	17.13
CDX92788	Canola	plastid	3.19	11.52

Protein Annotations

EnsemblPlants:CDY33083	EnsemblPlantsGene:GSBRNA2T00053727001	InterPro:Ataxin-2_C	InterPro:LsmAD_domain	InterPro:SM_dom_ATX	PANTHER:PTHR12854
PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145	PFAM:PF14438	ProteinID:CDY33083	ProteinID:CDY33083.1
SEG:seg	SMART:SM01272	UniParc:UPI0004EB840A	UniProt:A0A078H8A4	MapMan:35.1	:

Description

BnaC06g06960DBnaC06g06960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8A4]

Coordinates

chrLK032305:+:355334..359571

Molecular Weight (calculated)

65686.2 Da

IEP (calculated)

4.954

GRAVY (calculated)

-0.805

Length

595 amino acids

Sequence
(BLAST)

001: MNSQPLSNGY PYRRVEHQAG GMNKAQQMKQ HTLKKNGGKA GTVDISSRYP FEYLAACHIG HRVEVHLKDG SVYGAVFHAA DVDNSFGIVL KMASLIREGT
101: LPGMKPPSPL VSKPPSKILI IPADEVVQVI AKDLPVYSDN ASNSAQCERP LELLTDSSIS QSTHVDLGRE LERWVPDEDV PDCSDLENVF DDPWKRGWNQ
201: FEVNKTLFGV TSTFDEELYT TKLERGPRTR ELEEQALRIA REIEGENTRD LHVAEERGFQ LSGEFDMDEE TKYSSVCPVN GFDDSGYEED EEEEILLNCR
301: NNLTFGDSTA SDGMKSASTG NGKVYEESWG GGSLSSVGQS CSNSNMHARQ PMFEQPSKVT PAPGNNNRNE SQFGEQTNIK SVEATHYRKP SMESVSGLED
401: INEDAATSDP WRASDRQNST DGKLLGRLSD RAKPESSCWR PGSSISRNPE NSATSSPSSR PMLSPSSSIG SYSSEKSTLN PNAKEFKPNP NAKSFKPSPT
501: ATRPQSPVPE GSFYYPPLPP MPGIHIVYGM GAAFPGQHPV MYNNTPQLGP NQTYYSPSSP QYPQQMMVGP QRPALFMPPP PPYQPEMQYK GRDSY

Best Arabidopsis Sequence Match ( AT1G54170.1 )
(BLAST)

001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY

Arabidopsis Description

CID3Polyadenylate-binding protein-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L793]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.