Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g066340.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54170.1 | Solyc06g066340.2.1 | AT5G16560.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g062860.2.1 | Tomato | cytosol | 69.98 | 71.11 |
| VIT_09s0002g01560.t01 | Wine grape | nucleus | 54.82 | 54.99 |
| KRH23258 | Soybean | cytosol | 52.29 | 51.72 |
| KRH10084 | Soybean | nucleus | 52.13 | 51.4 |
| KRH06143 | Soybean | cytosol, plastid | 49.76 | 50.16 |
| KRH47566 | Soybean | plastid | 48.82 | 48.89 |
| CDY08218 | Canola | cytosol | 36.33 | 42.44 |
| Bra014367.1-P | Field mustard | cytosol | 35.86 | 42.19 |
| CDY26136 | Canola | cytosol | 35.39 | 42.18 |
| TraesCS6A01G022300.1 | Wheat | nucleus | 35.7 | 40.94 |
| AT1G54170.1 | Thale cress | nucleus | 37.6 | 40.55 |
| GSMUA_Achr7P11380_001 | Banana | mitochondrion | 39.81 | 39.62 |
| TraesCS6B01G028800.1 | Wheat | nucleus | 36.97 | 39.53 |
| AT3G14010.5 | Thale cress | nucleus, plastid | 37.28 | 39.14 |
| Bra037969.1-P | Field mustard | cytosol | 36.65 | 39.06 |
| OQU84946 | Sorghum | nucleus | 37.28 | 39.01 |
| CDY33083 | Canola | nucleus | 36.65 | 38.99 |
| TraesCS6D01G024600.2 | Wheat | nucleus | 36.18 | 38.95 |
| GSMUA_Achr6P06300_001 | Banana | mitochondrion | 39.97 | 38.92 |
| Bra021526.1-P | Field mustard | cytosol | 39.34 | 38.85 |
| CDY51396 | Canola | cytosol | 36.49 | 38.82 |
| CDY33254 | Canola | extracellular | 39.18 | 38.75 |
| Os02t0480900-01 | Rice | nucleus | 35.39 | 37.9 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 37.28 | 36.14 |
| CDY39090 | Canola | cytosol | 37.6 | 36.12 |
| HORVU6Hr1G003890.1 | Barley | mitochondrion, plastid | 36.49 | 35.87 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 35.23 | 35.12 |
| Bra001533.1-P | Field mustard | nucleus | 34.12 | 20.99 |
| CDX82502 | Canola | nucleus | 33.97 | 20.96 |
| CDX75744 | Canola | golgi, plastid, vacuole | 33.33 | 18.59 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 12.64 | 15.81 |
Protein Annotations
| MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0010494 | GO:GO:0010603 | GO:GO:0016043 | GO:GO:0034063 | UniProt:K4BMZ3 | InterPro:LsmAD_domain |
| PFAM:PF06741 | PFAM:PF14438 | PANTHER:PTHR12854 | PANTHER:PTHR12854:SF7 | SMART:SM01272 | InterPro:SM_dom_ATX |
| EnsemblPlantsGene:Solyc03g121950.2 | EnsemblPlants:Solyc03g121950.2.1 | UniParc:UPI00027657C2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:-:69944115..69953293
Molecular Weight (calculated)
69352.7 Da
IEP (calculated)
5.718
GRAVY (calculated)
-0.631
Length
633 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQAVQSRSF ANGFGSRKGE KEMGTRLESK MQSTKTTSSK STAVGKGGSY ESPSHDRLVY FSTCLLGHQV EVQTTDGSVF SGIFHATNAD KDFGIILKLA
101: HLIKDGSLES KNTPESLVKP PSKTLIIPGK ELVQVLAKGV PASLDVFRAE LLREKQLELL TDSCISQSRH GEVERQLERW VPDDDALECP ELDNIFDGHW
201: NRGWDQFQAN ETLFGVKSTF NEELYTTKLD KGPQMRELEK EALRIAREIE GEETRDLHLA EERGIQLHGS LEIDEETRFS AVVRGVDDSG YGDCEDILLD
301: SRNDETFQCI SSSSMGKSFT GMSVGEVVDG VEFSSRSSSL DELQSSQLST SRDVYQTYYD DHSKQSSAKH VPQSASKMDE SRGHKITFNE HDGASCNDEE
401: TRMQMLAEGA HTSIPEDSKS SLRVKMETLD KGVSSMNVSA LAPVPEFQEK ITGSFSEKGA VGSSKSRDNT RSVNSCVRPS SSALSSIDRA GAASSNGLSR
501: SSSVSSLSSE KSTKSTLNPH AKEFKFNPSA KSFVPSQATL RPTSPVSDNS FYYPAGMAAM PHMHGMSMGL GVGPSFAGHQ SVVYNPQGTP VPQPYFHPNG
601: PQYGQQMMIG HPRQVVYMPT YPPESPYKGR GEY
101: HLIKDGSLES KNTPESLVKP PSKTLIIPGK ELVQVLAKGV PASLDVFRAE LLREKQLELL TDSCISQSRH GEVERQLERW VPDDDALECP ELDNIFDGHW
201: NRGWDQFQAN ETLFGVKSTF NEELYTTKLD KGPQMRELEK EALRIAREIE GEETRDLHLA EERGIQLHGS LEIDEETRFS AVVRGVDDSG YGDCEDILLD
301: SRNDETFQCI SSSSMGKSFT GMSVGEVVDG VEFSSRSSSL DELQSSQLST SRDVYQTYYD DHSKQSSAKH VPQSASKMDE SRGHKITFNE HDGASCNDEE
401: TRMQMLAEGA HTSIPEDSKS SLRVKMETLD KGVSSMNVSA LAPVPEFQEK ITGSFSEKGA VGSSKSRDNT RSVNSCVRPS SSALSSIDRA GAASSNGLSR
501: SSSVSSLSSE KSTKSTLNPH AKEFKFNPSA KSFVPSQATL RPTSPVSDNS FYYPAGMAAM PHMHGMSMGL GVGPSFAGHQ SVVYNPQGTP VPQPYFHPNG
601: PQYGQQMMIG HPRQVVYMPT YPPESPYKGR GEY
001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
Arabidopsis Description
CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.