Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26136 | Canola | cytosol | 59.28 | 65.54 |
| CDY08218 | Canola | cytosol | 59.11 | 64.02 |
| CDY33083 | Canola | nucleus | 63.37 | 62.52 |
| Bra014367.1-P | Field mustard | cytosol | 57.24 | 62.45 |
| CDY51396 | Canola | cytosol | 62.35 | 61.51 |
| Bra037969.1-P | Field mustard | cytosol | 61.16 | 60.44 |
| AT3G14010.5 | Thale cress | nucleus, plastid | 53.49 | 52.07 |
| KRH23258 | Soybean | cytosol | 44.8 | 41.09 |
| KRH10084 | Soybean | nucleus | 44.63 | 40.81 |
| VIT_09s0002g01560.t01 | Wine grape | nucleus | 42.76 | 39.78 |
| KRH06143 | Soybean | cytosol, plastid | 42.42 | 39.65 |
| KRH47566 | Soybean | plastid | 42.59 | 39.56 |
| Solyc03g121950.2.1 | Tomato | plastid | 40.55 | 37.6 |
| TraesCS6A01G022300.1 | Wheat | nucleus | 35.26 | 37.5 |
| Solyc06g062860.2.1 | Tomato | cytosol | 39.35 | 37.08 |
| TraesCS6D01G024600.2 | Wheat | nucleus | 36.46 | 36.39 |
| Os02t0480900-01 | Rice | nucleus | 36.46 | 36.21 |
| TraesCS6B01G028800.1 | Wheat | nucleus | 36.46 | 36.15 |
| PGSC0003DMT400012530 | Potato | nucleus | 12.1 | 35.15 |
| GSMUA_Achr6P06300_001 | Banana | mitochondrion | 38.84 | 35.08 |
| OQU84946 | Sorghum | nucleus | 35.78 | 34.71 |
| HORVU6Hr1G003890.1 | Barley | mitochondrion, plastid | 36.12 | 32.92 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 36.46 | 32.77 |
| GSMUA_Achr7P11380_001 | Banana | mitochondrion | 35.26 | 32.55 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 34.92 | 32.28 |
| AT4G26990.1 | Thale cress | plasma membrane | 14.48 | 17.93 |
| AT5G54920.2 | Thale cress | plastid | 14.48 | 16.28 |
Protein Annotations
| MapMan:35.1 | EntrezGene:841857 | UniProt:A0A178WF06 | ProteinID:AAD25791.1 | ProteinID:AEE33057.1 | ArrayExpress:AT1G54170 |
| EnsemblPlantsGene:AT1G54170 | RefSeq:AT1G54170 | TAIR:AT1G54170 | RefSeq:AT1G54170-TAIR-G | EnsemblPlants:AT1G54170.1 | TAIR:AT1G54170.1 |
| EMBL:AY136398 | Unigene:At.37271 | InterPro:Ataxin-2_C | EMBL:BT000204 | Symbol:CID3 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010603 | GO:GO:0016043 |
| GO:GO:0034063 | InterPro:LsmAD_domain | RefSeq:NP_175819.1 | ProteinID:OAP16065.1 | PFAM:PF06741 | PFAM:PF07145 |
| PFAM:PF14438 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12854 |
| PANTHER:PTHR12854:SF7 | UniProt:Q8L793 | SMART:SM01272 | InterPro:SM_dom_ATX | UniParc:UPI00000AC439 | SEG:seg |
Description
CID3Polyadenylate-binding protein-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L793]
Coordinates
chr1:-:20221029..20226055
Molecular Weight (calculated)
65392.8 Da
IEP (calculated)
4.743
GRAVY (calculated)
-0.737
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.