Factsheet for AT3G14010.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33254	Canola	extracellular	67.5	63.59
Bra021526.1-P	Field mustard	cytosol	66.83	62.87
CDY39090	Canola	cytosol	63.68	58.27
AT1G54170.1	Thale cress	nucleus	52.07	53.49
KRH23258	Soybean	cytosol	43.45	40.94
KRH10084	Soybean	nucleus	42.95	40.34
TraesCS6A01G022300.1	Wheat	nucleus	36.82	40.22
Solyc06g062860.2.1	Tomato	cytosol	41.29	39.97
VIT_09s0002g01560.t01	Wine grape	nucleus	41.63	39.78
KRH47566	Soybean	plastid	41.63	39.72
KRH06143	Soybean	cytosol, plastid	40.8	39.17
PGSC0003DMT400012530	Potato	nucleus	13.1	39.11
TraesCS6D01G024600.2	Wheat	nucleus	36.82	37.76
Solyc03g121950.2.1	Tomato	plastid	39.14	37.28
TraesCS6B01G028800.1	Wheat	nucleus	36.48	37.16
OQU84946	Sorghum	nucleus	37.15	37.02
Os02t0480900-01	Rice	nucleus	35.82	36.55
GSMUA_Achr6P06300_001	Banana	mitochondrion	37.31	34.62
Zm00001d016496_P004	Maize	cytosol, plastid	37.48	34.61
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	36.65	34.32
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	35.49	33.7
CDX82502	Canola	nucleus	56.88	33.43
GSMUA_Achr7P11380_001	Banana	mitochondrion	34.83	33.02
Bra001533.1-P	Field mustard	nucleus	56.22	32.94
CDX75744	Canola	golgi, plastid, vacuole	55.89	29.69
AT5G54920.2	Thale cress	plastid	14.26	16.48
AT4G26990.1	Thale cress	plasma membrane	12.94	16.46

Protein Annotations

MapMan:35.1	EntrezGene:820615	UniProt:A0A1I9LLC0	ProteinID:AEE75452.1	ProteinID:AEE75453.1	ProteinID:AEE75454.1
ProteinID:ANM63378.1	ArrayExpress:AT3G14010	EnsemblPlantsGene:AT3G14010	RefSeq:AT3G14010	TAIR:AT3G14010	RefSeq:AT3G14010-TAIR-G
EnsemblPlants:AT3G14010.5	EMBL:AY045922	EMBL:AY079365	InterPro:Ataxin-2_C	ProteinID:BAB02332.1	Symbol:CID4
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009987	GO:GO:0010494	GO:GO:0010603	GO:GO:0016043	GO:GO:0034063	InterPro:LsmAD_domain
RefSeq:NP_001078150.1	RefSeq:NP_001078151.1	RefSeq:NP_001325470.1	RefSeq:NP_566471.1	PFAM:PF06741	PFAM:PF07145
PFAM:PF14438	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	SMART:SM01272	InterPro:SM_dom_ATX	UniParc:UPI0008484E7E
SEG:seg	:	:	:	:	:

Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]

Coordinates

chr3:+:4636292..4641126

Molecular Weight (calculated)

66572.0 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.906

Length

603 amino acids

Sequence
(BLAST)

001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.