Factsheet for VIT_09s0002g01560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0043g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	VIT_04s0043g00340.t01	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10084	Soybean	nucleus	62.6	61.53
KRH23258	Soybean	cytosol	62.28	61.41
KRH06143	Soybean	cytosol, plastid	57.05	57.32
KRH47566	Soybean	plastid	57.05	56.96
Solyc06g062860.2.1	Tomato	cytosol	54.99	55.7
Solyc03g121950.2.1	Tomato	plastid	54.99	54.82
PGSC0003DMT400012530	Potato	nucleus	16.48	51.49
CDY08218	Canola	cytosol	38.35	44.65
Bra014367.1-P	Field mustard	cytosol	37.24	43.68
OQU84946	Sorghum	nucleus	41.84	43.64
CDY26136	Canola	cytosol	36.29	43.13
TraesCS6A01G022300.1	Wheat	nucleus	37.72	43.12
AT1G54170.1	Thale cress	nucleus	39.78	42.76
Os02t0480900-01	Rice	nucleus	39.94	42.64
TraesCS6D01G024600.2	Wheat	nucleus	39.3	42.18
TraesCS6B01G028800.1	Wheat	nucleus	39.14	41.72
CDY33083	Canola	nucleus	39.3	41.68
AT3G14010.5	Thale cress	nucleus, plastid	39.78	41.63
CDY51396	Canola	cytosol	39.14	41.51
GSMUA_Achr6P06300_001	Banana	mitochondrion	42.47	41.23
Bra021526.1-P	Field mustard	cytosol	41.84	41.19
GSMUA_Achr7P11380_001	Banana	mitochondrion	41.36	41.04
Bra037969.1-P	Field mustard	cytosol	38.51	40.91
CDY33254	Canola	extracellular	41.36	40.78
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	39.94	39.69
Zm00001d016496_P004	Maize	cytosol, plastid	40.1	38.74
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	39.46	38.66
CDY39090	Canola	cytosol	40.25	38.54
CDX82502	Canola	nucleus	35.82	22.03
Bra001533.1-P	Field mustard	nucleus	35.82	21.96
CDX75744	Canola	golgi, plastid, vacuole	35.66	19.82
VIT_19s0090g00300.t01	Wine grape	nucleus	15.06	16.52

Protein Annotations

EntrezGene:100265239	wikigene:100265239	MapMan:35.1	ProteinID:CBI35895	ProteinID:CBI35895.3	ncoils:Coil
UniProt:D7TZU9	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0010494	GO:GO:0010603	GO:GO:0016043	GO:GO:0034063	EntrezGene:LOC100265239	wikigene:LOC100265239
InterPro:LsmAD_domain	PFAM:PF06741	PFAM:PF14438	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	SMART:SM01272
InterPro:SM_dom_ATX	UniParc:UPI0001983DCB	ArrayExpress:VIT_09s0002g01560	EnsemblPlantsGene:VIT_09s0002g01560	EnsemblPlants:VIT_09s0002g01560.t01	unigene:Vvi.12906
RefSeq:XP_002275748	RefSeq:XP_002275748.1	RefSeq:XP_010654475.1	RefSeq:XP_010654476.1	RefSeq:XP_010654477.1	RefSeq:XP_019077800.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:1348956..1370809

Molecular Weight (calculated)

68817.9 Da

IEP (calculated)

5.884

GRAVY (calculated)

-0.670

Length

631 amino acids

Sequence
(BLAST)

001: MNLQQVAQPR PFANGFGRRR EMGSRQDNKL QSGKSNPSRL PNAGVFTGTK GGGYESSSRD RLVYLTTCFI GLPVEVQVKN GSIISGIFHA TNADKDFGIV
101: LKMARLTKDG PVRGQKAISD SVSKAPSKIL IIPAKELVQV IAKDVSVTRD GFSNELQQDK LQDIMLDSII SQSRHIEMER ELERWVPDED IPQCPELEKT
201: FDGPWKRGWD QFEINKKLFG VNSTFDEEIY TTKLDRGPQT RELEKEALRL AREIEGEETH DLHLAEERGL HLHANFDIDE EARFSSVLRR VDISEDNEDG
301: MLDSHNDETF GGSSGLAIGR HFADLTTGKS SDVAQVSSSS SSVDEAQSSQ SGTGLDLYHS GSHDHARHLA LDSQSRVQEN QFSEQQVGNN HAKEFVEKQT
401: LAEEAQTSKS EDLQSLLDAK KDGSDKGGLS PNATAYAPSH GSSKSQENMG SPAEVSEGPV SARTMGETQS VNSRGRPSSS TSSASDCVGA TPASIGPGLS
501: PSSSVGSLSS EKSTLNPHAK EFKLNPNAKS FIPSQTPVRP PSPVSDGSFY FPTNVPAIPH MHVPVGVGIG HSFSGHQPVI FNPQAAPIQS PQTYFHPNGP
601: QYGQQMFFGH PRQVLYMPGY PPEMPYKGRD F

Best Arabidopsis Sequence Match ( AT3G14010.5 )
(BLAST)

001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.