Factsheet for Bra014367.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008613.1-P
Bra023570.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	Bra008613.1-P	AT5G16560.1	21798944
AT1G54170.1	Bra023570.1-P	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08218	Canola	cytosol	92.38	91.7
Bra037969.1-P	Field mustard	cytosol	67.66	61.28
AT1G54170.1	Thale cress	nucleus	62.45	57.24
Bra021526.1-P	Field mustard	cytosol	56.13	47.11
KRH06143	Soybean	cytosol, plastid	44.98	38.53
KRH23258	Soybean	cytosol	45.54	38.28
KRH47566	Soybean	plastid	44.42	37.82
KRH10084	Soybean	nucleus	44.98	37.69
VIT_09s0002g01560.t01	Wine grape	nucleus	43.68	37.24
Solyc06g062860.2.1	Tomato	cytosol	42.94	37.08
TraesCS6A01G022300.1	Wheat	nucleus	36.99	36.05
Solyc03g121950.2.1	Tomato	plastid	42.19	35.86
TraesCS6D01G024600.2	Wheat	nucleus	37.92	34.69
Os02t0480900-01	Rice	nucleus	38.1	34.69
TraesCS6B01G028800.1	Wheat	nucleus	38.1	34.63
GSMUA_Achr6P06300_001	Banana	mitochondrion	41.64	34.46
OQU84946	Sorghum	nucleus	38.48	34.21
GSMUA_Achr7P11380_001	Banana	mitochondrion	38.85	32.86
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	38.29	31.99
PGSC0003DMT400012530	Potato	nucleus	11.9	31.68
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	36.8	31.18
Zm00001d016496_P004	Maize	cytosol, plastid	37.73	31.09
Bra001533.1-P	Field mustard	nucleus	47.77	24.98
Bra026388.1-P	Field mustard	nucleus	13.38	15.38

Protein Annotations

EnsemblPlants:Bra014367.1	EnsemblPlants:Bra014367.1-P	EnsemblPlantsGene:Bra014367	Gene3D:2.30.30.100	InterPro:Ataxin-2_C	InterPro:LSM_dom_sf
InterPro:LsmAD_domain	InterPro:SM_dom_ATX	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145
PFAM:PF14438	SEG:seg	SMART:SM01272	SUPFAM:SSF50182	UniParc:UPI00025459D9	UniProt:M4DD00
MapMan:35.1	:	:	:	:	:

Description

AT1G54170 (E=7e-119) CID3 | CID3 (CTC-Interacting Domain 3)

Coordinates

chrA08:-:1377649..1380776

Molecular Weight (calculated)

58886.3 Da

IEP (calculated)

4.683

GRAVY (calculated)

-0.701

Length

538 amino acids

Sequence
(BLAST)

001: MNSQPSSSGY PHTRVDKETG MKVAENGGKA GSVDTPSRDP FVYLTTCKIG HHVEVQLKNG SVYSGIFHAA DVENNFGIIL KMASLIREGS VRGMKPRAPL
101: VSKPPSKVFI IPADEVVQVI AKDLPVYSNN VSECEKPSEL LTDSSISQSY HVDSERELQR WVPDEDVPDC PDLENVFDDP WKRGWNQFEV NETLFGVTST
201: FDEELYTTKL ERGPRTRELE EQALRIAGEI EGENTRDLHV AEERGLQLSG KFDIDEETKY SSVCPANGFD DSGYDEEEEI LLDCRNNLTF GDSTTGSNGI
301: KSASAGKDIP IPSPGSNIRN ESQLAEQRNG KILESKPSEE SVSGLDDTKA DAAASDPASV QWRASDKQSS TDGKLAGPLT DRGKSEWPGT SISRNPENSA
401: ASSTSSLPML SPSSSIGSYS SEKSTLNPNA KEFKLNPNAK SFKPSPTATR PQSPVPEGSF YYPPLPQMTG IHIGYGMGAA FPGQQPMVYH NTMQPGPNQT
501: FYPPNGPQYH PQQIMVGQQR PVLFMPPSPY QPVYHYPL

Best Arabidopsis Sequence Match ( AT1G54170.1 )
(BLAST)

001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY

Arabidopsis Description

CID3Polyadenylate-binding protein-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L793]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.