Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G022300.1 | Wheat | nucleus | 87.58 | 93.3 |
| TraesCS6B01G028800.1 | Wheat | nucleus | 93.37 | 92.74 |
| HORVU6Hr1G003890.1 | Barley | mitochondrion, plastid | 92.69 | 84.63 |
| OQU84946 | Sorghum | nucleus | 70.75 | 68.76 |
| Os02t0480900-01 | Rice | nucleus | 68.71 | 68.36 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 67.69 | 62.68 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 66.16 | 59.57 |
| GSMUA_Achr6P06300_001 | Banana | mitochondrion | 43.54 | 39.38 |
| VIT_09s0002g01560.t01 | Wine grape | nucleus | 42.18 | 39.3 |
| KRH10084 | Soybean | nucleus | 42.18 | 38.63 |
| KRH23258 | Soybean | cytosol | 42.01 | 38.59 |
| GSMUA_Achr7P11380_001 | Banana | mitochondrion | 41.5 | 38.36 |
| CDY08218 | Canola | cytosol | 35.2 | 38.19 |
| CDY26136 | Canola | cytosol | 34.35 | 38.04 |
| Bra014367.1-P | Field mustard | cytosol | 34.69 | 37.92 |
| Solyc06g062860.2.1 | Tomato | cytosol | 39.29 | 37.08 |
| AT3G14010.5 | Thale cress | nucleus, plastid | 37.76 | 36.82 |
| KRH06143 | Soybean | cytosol, plastid | 39.29 | 36.78 |
| AT1G54170.1 | Thale cress | nucleus | 36.39 | 36.46 |
| KRH47566 | Soybean | plastid | 38.95 | 36.23 |
| Solyc03g121950.2.1 | Tomato | plastid | 38.95 | 36.18 |
| PGSC0003DMT400012530 | Potato | nucleus | 12.24 | 35.64 |
| CDY33254 | Canola | extracellular | 37.76 | 34.69 |
| Bra021526.1-P | Field mustard | cytosol | 37.76 | 34.63 |
| CDY51396 | Canola | cytosol | 34.35 | 33.95 |
| CDY33083 | Canola | nucleus | 34.01 | 33.61 |
| Bra037969.1-P | Field mustard | cytosol | 33.84 | 33.5 |
| CDY39090 | Canola | cytosol | 36.22 | 32.32 |
| CDX82502 | Canola | nucleus | 32.82 | 18.81 |
| Bra001533.1-P | Field mustard | nucleus | 32.65 | 18.66 |
| CDX75744 | Canola | golgi, plastid, vacuole | 32.82 | 17.0 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 8.84 | 11.82 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G024600.2 | EnsemblPlantsGene:TraesCS6D01G024600 | Gene3D:2.30.30.100 | InterPro:LsmAD_domain | InterPro:SM_dom_ATX | ncoils:Coil |
| PANTHER:PTHR12854 | PANTHER:PTHR12854:SF7 | PFAM:PF06741 | PFAM:PF14438 | SEG:seg | SMART:SM01272 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:9352845..9360442
Molecular Weight (calculated)
64233.7 Da
IEP (calculated)
6.556
GRAVY (calculated)
-0.837
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGMMSRQQQ HAPLRTSANG APHRKLDREG SGRHDSKSHL MRSSSGGFTS AENGGKLGHA NPSRDRLVYV MTQIIGHHVD VHVKNGSVIS GIFHATNTDK
101: DFGIILKMAQ PIKDTSVGGQ INTSDVVRKP ETMIIPAREL VQVFAKDVTL GGDELPKGPV HDKRKDLMID SAISRSHFPE ERELERWAPD EGDSDCIELE
201: KFDRKGHRSW DQFETNAALF GVKSTFNEDL YTTKLERGPH MRELEKHASR IAREIEGEDT EDLHLAEERG LYLDEDLEHD EEIKYSAVRR DTDTTVKPFT
301: NVPSRPVSID TKDLPVCSST MDDKSSSHIS GGTHLSATAE YQSNKLLPAD ANRLDGKRSK DSSGDKDNRI LQPENTLPEG GRPLISEDLE GAPSRSRASE
401: PSSSGQGNKP SDGLAQDSTL PSKLPSAPEY ANSSQRPGSS TPLTSERVAA NSAASAAPGL SPSSSMGSLS SDKSSLNPNA KEFKLNPNAK SFTPLTSPRP
501: HHPPAPDATY YYPNNMGATG PGLPVGMGFP QAYGGQPVVY NAQPGSSPQG YMHPSGQQYG QQMMMGQTRP VYYYAPEMQQ QQYRGRNF
101: DFGIILKMAQ PIKDTSVGGQ INTSDVVRKP ETMIIPAREL VQVFAKDVTL GGDELPKGPV HDKRKDLMID SAISRSHFPE ERELERWAPD EGDSDCIELE
201: KFDRKGHRSW DQFETNAALF GVKSTFNEDL YTTKLERGPH MRELEKHASR IAREIEGEDT EDLHLAEERG LYLDEDLEHD EEIKYSAVRR DTDTTVKPFT
301: NVPSRPVSID TKDLPVCSST MDDKSSSHIS GGTHLSATAE YQSNKLLPAD ANRLDGKRSK DSSGDKDNRI LQPENTLPEG GRPLISEDLE GAPSRSRASE
401: PSSSGQGNKP SDGLAQDSTL PSKLPSAPEY ANSSQRPGSS TPLTSERVAA NSAASAAPGL SPSSSMGSLS SDKSSLNPNA KEFKLNPNAK SFTPLTSPRP
501: HHPPAPDATY YYPNNMGATG PGLPVGMGFP QAYGGQPVVY NAQPGSSPQG YMHPSGQQYG QQMMMGQTRP VYYYAPEMQQ QQYRGRNF
001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
Arabidopsis Description
CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.