Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6B01G338900.1 | |
| TraesCS6D01G288600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | TraesCS6B01G338900.1 | AT1G24050.1 | 21798944 |
| AT4G26990.1 | TraesCS6D01G288600.1 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 90.45 | 89.84 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 81.36 | 81.55 |
| Os04t0625900-01 | Rice | plastid | 51.59 | 50.22 |
| Zm00001d002243_P004 | Maize | mitochondrion | 51.36 | 49.78 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 47.27 | 49.06 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 50.68 | 48.9 |
| KRH46148 | Soybean | plastid | 15.68 | 32.24 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 9.09 | 29.63 |
| CDX92788 | Canola | plastid | 9.32 | 24.85 |
| KRG98802 | Soybean | nucleus | 26.14 | 23.23 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 25.91 | 22.49 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 25.45 | 22.13 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 28.86 | 22.09 |
| CDY46672 | Canola | nucleus | 20.45 | 20.41 |
| CDY29262 | Canola | nucleus | 21.14 | 19.91 |
| CDX89288 | Canola | nucleus | 20.45 | 19.31 |
| AT4G26990.1 | Thale cress | plasma membrane | 20.68 | 19.2 |
| Bra026388.1-P | Field mustard | nucleus | 20.0 | 18.8 |
| AT5G54920.2 | Thale cress | plastid | 22.27 | 18.77 |
| KRH46146 | Soybean | nucleus, plastid | 11.14 | 17.07 |
| TraesCS6D01G024600.2 | Wheat | nucleus | 11.82 | 8.84 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G472800.1 | EnsemblPlantsGene:TraesCS2D01G472800 | InterPro:Ataxin-2_C | PANTHER:PTHR12854 | PANTHER:PTHR12854:SF12 | PFAM:PF07145 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:576283947..576289877
Molecular Weight (calculated)
43583.8 Da
IEP (calculated)
10.112
GRAVY (calculated)
-0.020
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPKKAKAA PAPPAVCEAL LLATVCMVGL PXXXXXXXXX XXXXXXXXXX XXXXXXVVLK KARKIANGKD NANLVLGAFV DTLVVLPDDL VQVIAKDFSL
101: ATKDISKTSA CDVVAASGLM QPQTSHLGDP KASRQVEKCS RLCQNSDNPT GKIAPMNSNA ANVCSPIEHI VPNWNAIPTS ADIGSKDGNV VNSVLATPVV
201: ASNVKTSQPI NNSSIKAVMS SKTTAKESKL NPHAKVFAPS FASSRPVLAA APPVNPNYIS NSVSGVPTGV PVFQTHSHPG SSSLSSKVVH YNNLAPGNFG
301: MSPQYVQSVV GHNVGRLDPA RLGTPYHPLQ VGSTYISPSP QPMVDGKFSP VVYVHPVSQD AMRGTPVMSQ VWPRPLLLNS HQASMQKFQG TAPFFGAPPV
401: MATGNLPMVM PSPATLVQPF QAIHPIMVPS ATSMYPGKYM
101: ATKDISKTSA CDVVAASGLM QPQTSHLGDP KASRQVEKCS RLCQNSDNPT GKIAPMNSNA ANVCSPIEHI VPNWNAIPTS ADIGSKDGNV VNSVLATPVV
201: ASNVKTSQPI NNSSIKAVMS SKTTAKESKL NPHAKVFAPS FASSRPVLAA APPVNPNYIS NSVSGVPTGV PVFQTHSHPG SSSLSSKVVH YNNLAPGNFG
301: MSPQYVQSVV GHNVGRLDPA RLGTPYHPLQ VGSTYISPSP QPMVDGKFSP VVYVHPVSQD AMRGTPVMSQ VWPRPLLLNS HQASMQKFQG TAPFFGAPPV
401: MATGNLPMVM PSPATLVQPF QAIHPIMVPS ATSMYPGKYM
001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
Arabidopsis Description
AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.