CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY15876
CDY59763
CDY70933
CDY72366

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34230.1	CDY15876	AT2G21660.1	21798944
AT4G34230.1	CDY59763	AT2G21660.1	21798944
AT4G34230.1	CDY70933	AT2G21660.1	21798944
AT4G34230.1	CDY72366	AT2G21660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75413	Canola	cytosol	96.64	96.64
CDX72466	Canola	cytosol	95.24	95.24
CDY49288	Canola	cytosol	95.24	95.24
AT4G34230.1	Thale cress	cytosol	93.0	93.0
VIT_03s0180g00260.t01	Wine grape	cytosol	79.55	79.55
Solyc01g107590.2.1	Tomato	cytosol, extracellular	77.59	77.59
PGSC0003DMT400066217	Potato	cytosol	77.31	77.31
KRG91021	Soybean	cytosol, nucleus	76.75	76.75
KRH35742	Soybean	cytosol, nucleus	76.47	76.26
CDY46173	Canola	cytosol	77.87	76.16
VIT_03s0180g00250.t01	Wine grape	cytosol	75.63	75.63
CDX99222	Canola	cytosol	77.31	75.41
TraesCS6B01G201600.1	Wheat	cytosol	74.23	73.61
HORVU6Hr1G035420.6	Barley	cytosol	74.79	73.35
TraesCS6A01G173700.1	Wheat	cytosol	73.95	73.33
TraesCS6D01G162800.1	Wheat	cytosol	73.67	73.06
GSMUA_Achr4P12970_001	Banana	cytosol	72.27	72.27
GSMUA_Achr4P06150_001	Banana	cytosol	71.71	71.71
KXG29649	Sorghum	cytosol	72.83	71.23
Zm00001d015618_P001	Maize	extracellular	73.11	71.12
Os02t0187800-01	Rice	cytosol	72.27	71.07
CDY56752	Canola	cytosol	50.7	50.28
CDX72704	Canola	cytosol	50.42	50.0
CDY52519	Canola	cytosol	49.02	49.58
CDX90391	Canola	cytosol	48.74	49.29
CDX69348	Canola	cytosol	47.34	47.34
CDX90392	Canola	cytosol	47.06	47.06
CDX75688	Canola	cytosol	47.06	47.06
CDY52520	Canola	cytosol	34.45	46.77
CDX69347	Canola	cytosol	47.06	46.41
CDX76968	Canola	cytosol	46.22	46.09
CDX75687	Canola	cytosol	46.5	45.86
CDY13791	Canola	cytosol	45.66	45.53
CDY72501	Canola	cytosol	23.53	44.92
CDX72936	Canola	cytosol	43.98	44.73
CDY63551	Canola	cytosol	7.84	41.79

Protein Annotations

MapMan:21.6.1.8	Gene3D:3.40.50.720	Gene3D:3.90.180.10	GO:A0A078BXI8	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	EnsemblPlants:CDX69037	ProteinID:CDX69037	ProteinID:CDX69037.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00130795001	InterPro:GroES-like_sf	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER
ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF1	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
UniParc:UPI0004EE05BE	SEG:seg	:	:	:	:

Description

BnaC01g04160D

Coordinates

chrLK031789:-:2591623..2593793

Molecular Weight (calculated)

38712.0 Da

IEP (calculated)

6.085

GRAVY (calculated)

-0.023

Length

357 amino acids

Sequence
(BLAST)

001: MGKVEVERKT TGWAARDPSG LLSPYTYTLS ETGPEDVHIR IICCGICHTD LHHTKNDLGT SNYPMVPGHE VVGEVVEVGS GVSKFTVGDI VGVGCLVGCC
101: GGCSPCERDL EQYCPKKIWS YNDVYIDGQP TQGGFAKATV VHQKFVVKIP EGMAAEQAAP LLCAGVTVYS PLSHFGLKKP GLRGGILGLG GVGHMGVKFA
201: KAMGHHVTVI SSSNKKREEA LQDLGADDYV IGSDQSKMNE LADSMDYIID TVPVHHALEP YLSLLRLDGK LILMGVINNP LQFLTPMVMI GKKVITGSFI
301: GSMKETEEML EFCKEKGLSS IIEVVKMDYV NTALERLEKN DVRYRFVVDV EGSKLEA

Best Arabidopsis Sequence Match ( AT4G34230.1 )
(BLAST)

001: MGIMEAERKT TGWAARDPSG ILSPYTYTLR ETGPEDVNIR IICCGICHTD LHQTKNDLGM SNYPMVPGHE VVGEVVEVGS DVSKFTVGDI VGVGCLVGCC
101: GGCSPCERDL EQYCPKKIWS YNDVYINGQP TQGGFAKATV VHQKFVVKIP EGMAVEQAAP LLCAGVTVYS PLSHFGLKQP GLRGGILGLG GVGHMGVKIA
201: KAMGHHVTVI SSSNKKREEA LQDLGADDYV IGSDQAKMSE LADSLDYVID TVPVHHALEP YLSLLKLDGK LILMGVINNP LQFLTPLLML GRKVITGSFI
301: GSMKETEEML EFCKEKGLSS IIEVVKMDYV NTAFERLEKN DVRYRFVVDV EGSNLDA

Arabidopsis Description

CAD5Cinnamyl alcohol dehydrogenase 5 [Source:UniProtKB/Swiss-Prot;Acc:O49482]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.