Factsheet for Zm00001d015618_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013568_P001
Zm00001d031168_P001
Zm00001d041246_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34230.1	Zm00001d013568_P001	AT2G21660.1	21798944
AT4G34230.1	Zm00001d031168_P001	AT2G21660.1	21798944
AT4G34230.1	Zm00001d041246_P001	AT2G21660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29649	Sorghum	cytosol	96.19	96.71
TraesCS6B01G201600.1	Wheat	cytosol	87.74	89.44
TraesCS6A01G173700.1	Wheat	cytosol	87.74	89.44
HORVU6Hr1G035420.6	Barley	cytosol	88.28	89.01
TraesCS6D01G162800.1	Wheat	cytosol	87.19	88.89
Os02t0187800-01	Rice	cytosol	87.74	88.71
GSMUA_Achr4P06150_001	Banana	cytosol	77.38	79.55
GSMUA_Achr4P12970_001	Banana	cytosol	76.57	78.71
VIT_03s0180g00260.t01	Wine grape	cytosol	76.02	78.15
Solyc01g107590.2.1	Tomato	cytosol, extracellular	75.2	77.31
PGSC0003DMT400066217	Potato	cytosol	74.66	76.75
VIT_03s0180g00250.t01	Wine grape	cytosol	73.02	75.07
CDY46173	Canola	cytosol	74.66	75.07
Bra022425.1-P	Field mustard	cytosol	74.66	75.07
CDX99222	Canola	cytosol	74.66	74.86
KRG91021	Soybean	cytosol, nucleus	72.21	74.23
KRH35742	Soybean	cytosol, nucleus	72.21	74.02
AT3G19450.1	Thale cress	cytosol	73.3	73.7
AT4G34230.1	Thale cress	cytosol	71.66	73.67
CDX72466	Canola	cytosol	71.39	73.39
Bra017639.1-P	Field mustard	cytosol	71.39	73.39
Bra011510.1-P	Field mustard	cytosol	71.39	73.39
CDY49288	Canola	cytosol	71.12	73.11
CDX75413	Canola	cytosol	71.12	73.11
CDX69037	Canola	cytosol	71.12	73.11
Zm00001d020400_P001	Maize	plastid	50.68	50.96
Zm00001d020401_P001	Maize	cytosol	30.79	48.92
Zm00001d004443_P001	Maize	extracellular	46.32	47.09
Zm00001d024314_P001	Maize	cytosol	44.96	45.96
Zm00001d002346_P002	Maize	plastid	44.69	44.32
Zm00001d045043_P001	Maize	cytosol	40.33	41.81
Zm00001d020402_P001	Maize	plastid	9.81	29.51
Zm00001d002250_P001	Maize	plastid	40.6	4.75

Protein Annotations

MapMan:21.6.1.8	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
ProteinID:AFP47216.1	ProteinID:AQK69213.1	UniProt:B6U7D8	EMBL:EU973153	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009699
GO:GO:0009809	GO:GO:0009987	GO:GO:0016491	GO:GO:0019748	GO:GO:0045551	GO:GO:0046872
GO:GO:0052747	GO:GO:0055114	InterPro:GroES-like_sf	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240
InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF1	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI000182EE0E	EnsemblPlantsGene:Zm00001d015618	EnsemblPlants:Zm00001d015618_P001	EnsemblPlants:Zm00001d015618_T001	SEG:seg

Description

brown midrib1Probable cinnamyl alcohol dehydrogenase

Coordinates

chr5:-:101493553..101498009

Molecular Weight (calculated)

38727.8 Da

IEP (calculated)

6.368

GRAVY (calculated)

0.162

Length

367 amino acids

Sequence
(BLAST)

001: MGSLASERKV VGWAARDATG HLSPYSYTLR NTGPEDVVVK VLYCGICHTD IHQAKNHLGA SKYPMVPGHE VVGEVVEVGP EVAKYGVGDV VGVGVIVGCC
101: RECSPCKANV EQYCNKKIWS YNDVYTDGRP TQGGFASTMV VDQKFVVKIP AGLAPEQAAP LLCAGVTVYS PLKHFGLTTP GLRGGILGLG GVGHMGVKVA
201: KAMGHHVTVI SSSSKKRAEA MDHLGADAYL VSSDAAAMAA AADSLDYIID TVPVHHPLEP YLALLKLDGK LVLLGVIGEP LSFVSPMVML GRKAITGSFI
301: GSIDETAEVL QFCVDKGLTS QIEVVKMGYV NEALERLERN DVRYRFVVDV AGSNVEAEAA AADAASN

Best Arabidopsis Sequence Match ( AT3G19450.1 )
(BLAST)

001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN

Arabidopsis Description

CAD4Cinnamyl alcohol dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:P48523]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.