Factsheet for PGSC0003DMT400066217

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001879
PGSC0003DMT400083014
PGSC0003DMT400084258
PGSC0003DMT400084266
PGSC0003DMT400084290

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34230.1	PGSC0003DMT400001879	AT2G21660.1	21798944
AT4G34230.1	PGSC0003DMT400083014	AT2G21660.1	21798944
AT4G34230.1	PGSC0003DMT400084258	AT2G21660.1	21798944
AT4G34230.1	PGSC0003DMT400084266	AT2G21660.1	21798944
AT4G34230.1	PGSC0003DMT400084290	AT2G21660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107590.2.1	Tomato	cytosol, extracellular	98.32	98.32
VIT_03s0180g00260.t01	Wine grape	cytosol	85.71	85.71
KRH35742	Soybean	cytosol, nucleus	83.47	83.24
KRG91021	Soybean	cytosol, nucleus	83.19	83.19
VIT_03s0180g00250.t01	Wine grape	cytosol	82.07	82.07
AT4G34230.1	Thale cress	cytosol	78.43	78.43
Bra017639.1-P	Field mustard	cytosol	78.15	78.15
CDX72466	Canola	cytosol	78.15	78.15
CDX75413	Canola	cytosol	77.87	77.87
CDY49288	Canola	cytosol	77.87	77.87
Bra011510.1-P	Field mustard	cytosol	77.59	77.59
CDX69037	Canola	cytosol	77.31	77.31
Bra022425.1-P	Field mustard	cytosol	78.71	76.99
CDY46173	Canola	cytosol	78.71	76.99
TraesCS6B01G201600.1	Wheat	cytosol	77.59	76.94
CDX99222	Canola	cytosol	78.71	76.78
TraesCS6A01G173700.1	Wheat	cytosol	77.31	76.67
TraesCS6D01G162800.1	Wheat	cytosol	77.03	76.39
HORVU6Hr1G035420.6	Barley	cytosol	77.87	76.37
GSMUA_Achr4P12970_001	Banana	cytosol	75.91	75.91
AT3G19450.1	Thale cress	cytosol	77.59	75.89
Os02t0187800-01	Rice	cytosol	76.75	75.48
Zm00001d015618_P001	Maize	extracellular	76.75	74.66
KXG29649	Sorghum	cytosol	75.91	74.25
GSMUA_Achr4P06150_001	Banana	cytosol	73.39	73.39
PGSC0003DMT400040518	Potato	cytosol	54.06	54.21
PGSC0003DMT400013704	Potato	cytosol	53.5	53.65
PGSC0003DMT400040520	Potato	cytosol	45.94	53.42
PGSC0003DMT400041563	Potato	cytosol	36.41	52.42
PGSC0003DMT400041566	Potato	cytosol	52.66	52.37
PGSC0003DMT400041578	Potato	cytosol	52.94	52.35
PGSC0003DMT400047475	Potato	cytosol	52.1	51.67
PGSC0003DMT400041573	Potato	cytosol	45.66	50.78
PGSC0003DMT400080827	Potato	cytosol	29.69	50.0
PGSC0003DMT400054502	Potato	peroxisome	46.78	46.39
PGSC0003DMT400024954	Potato	cytosol	34.45	45.9
PGSC0003DMT400043757	Potato	cytosol	14.85	45.69
PGSC0003DMT400033637	Potato	peroxisome	45.94	45.56
PGSC0003DMT400024956	Potato	cytosol	15.13	45.0
PGSC0003DMT400059621	Potato	cytosol	43.98	43.37
PGSC0003DMT400012845	Potato	cytosol	44.54	41.41
PGSC0003DMT400041571	Potato	cytosol	15.97	41.01
PGSC0003DMT400043759	Potato	cytosol	7.28	29.21

Protein Annotations

EntrezGene:102602480	MapMan:21.6.1.8	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009809	GO:GO:0009987	GO:GO:0016491	GO:GO:0019748
GO:GO:0045551	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:M1CF76	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF08240	EnsemblPlantsGene:PGSC0003DMG401025767	PGSC:PGSC0003DMG401025767	EnsemblPlants:PGSC0003DMT400066217	InterPro:PKS_ER
ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF1	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
UniParc:UPI000294E21A	RefSeq:XP_006346361.1	SEG:seg	:	:	:

Description

Cinnamyl alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG401025767]

Coordinates

chr1:+:84021419..84025385

Molecular Weight (calculated)

38935.3 Da

IEP (calculated)

5.997

GRAVY (calculated)

-0.052

Length

357 amino acids

Sequence
(BLAST)

001: MGSLEVEKTA IGWAARDPSG VLSPYTYTLR NTGPDDVQVK ILYCGLCHSD LHQVKNDLGM SNYPMVPGHE VVGEVVEVGP EVTKFKVGDI VGVGLLVGCC
101: KTCRPCQQDI EQYCAKKIWN CNDVYTDGKP TQGGFANFMV VEQKFVVKIP DGMAPEQAAP LLCAGVTVYS PLNHFGFNQS GLRGGILGLG GVGHMGVKIA
201: KAMGHHVTVI SSSDKKRQEA LDHLGADDYL VSSDNVKMQE AADSLDYIID TVPVNHPLEP YLSLLKVDGK LILMGVINTP LQFVSPMVML GRKSITGSFI
301: GSMKETEEVL HFCKEKGVTS QIEMVKMDYI NTAMERLEKN DVRYRFVVDV AGSKLDQ

Best Arabidopsis Sequence Match ( AT3G19450.1 )
(BLAST)

001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN

Arabidopsis Description

CAD4Cinnamyl alcohol dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:P48523]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.