Factsheet for PGSC0003DMT400040520

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011340.1.1	Tomato	cytosol	97.07	83.01
VIT_00s0371g00010.t01	Wine grape	cytosol	17.59	77.14
PGSC0003DMT400043757	Potato	cytosol	28.99	76.72
PGSC0003DMT400040518	Potato	cytosol	82.74	71.35
PGSC0003DMT400013704	Potato	cytosol	80.13	69.1
PGSC0003DMT400041563	Potato	cytosol	53.75	66.53
PGSC0003DMT400041566	Potato	cytosol	75.24	64.35
PGSC0003DMT400041573	Potato	cytosol	65.15	62.31
PGSC0003DMT400041578	Potato	cytosol	72.96	62.05
PGSC0003DMT400080827	Potato	cytosol	42.67	61.79
PGSC0003DMT400024954	Potato	cytosol	53.75	61.57
PGSC0003DMT400024956	Potato	cytosol	23.78	60.83
PGSC0003DMT400047475	Potato	cytosol	65.8	56.11
Zm00001d020401_P001	Maize	cytosol	41.37	54.98
AT4G37970.1	Thale cress	cytosol	63.84	53.99
TraesCS6A01G369800.1	Wheat	cytosol, golgi	64.17	53.97
TraesCS6B01G406000.1	Wheat	cytosol	63.84	53.55
TraesCS6B01G406300.1	Wheat	cytosol	63.52	53.42
TraesCS6D01G353300.1	Wheat	cytosol	63.52	53.42
TraesCS6D01G353700.1	Wheat	cytosol	63.52	53.28
CDX69347	Canola	cytosol	62.54	53.04
TraesCS6D01G353400.1	Wheat	cytosol	63.52	52.99
TraesCS6A01G370100.1	Wheat	cytosol	61.24	52.81
CDX75687	Canola	cytosol	61.89	52.49
Bra011798.1-P	Field mustard	cytosol	61.89	52.49
TraesCS6B01G406200.1	Wheat	cytosol	61.89	51.91
TraesCS5D01G210600.1	Wheat	cytosol	59.61	51.4
Zm00001d024314_P001	Maize	cytosol	59.93	51.25
TraesCS7A01G350500.1	Wheat	cytosol	61.89	51.21
TraesCS5B01G202700.1	Wheat	cytosol	59.28	51.12
PGSC0003DMT400041571	Potato	cytosol	23.13	51.08
TraesCS7D01G184600.1	Wheat	cytosol	33.55	50.99
TraesCS5A01G205700.1	Wheat	cytosol	58.96	50.84
EER96708	Sorghum	cytosol	59.61	50.83
EER98869	Sorghum	cytosol	59.61	50.55
TraesCS7B01G282100.1	Wheat	cytosol	60.91	50.54
TraesCS7D01G376600.1	Wheat	cytosol	60.26	50.27
TraesCS7A01G380100.1	Wheat	cytosol	60.26	50.27
Os09t0399800-01	Rice	cytosol	58.63	50.14
OQU80077	Sorghum	cytosol	60.91	50.13
TraesCS7B01G232400.1	Wheat	cytosol, plastid	61.56	50.13
Os09t0400400-01	Rice	cytosol	58.96	50.0
Zm00001d020400_P001	Maize	plastid	58.96	49.59
Os10t0430200-01	Rice	cytosol	58.96	49.45
TraesCS7D01G184500.1	Wheat	cytosol	57.33	49.3
TraesCS7A01G183000.1	Wheat	cytosol	57.0	49.02
Os08t0270400-00	Rice	cytosol	47.88	48.36
TraesCS2D01G422400.1	Wheat	cytosol	57.65	48.1
Os09t0400300-01	Rice	plasma membrane	54.4	47.99
TraesCS2A01G424600.1	Wheat	cytosol	57.33	47.7
TraesCS2B01G444200.2	Wheat	cytosol	57.0	47.43
TraesCS5B01G209800.2	Wheat	plastid	59.93	47.3
Zm00001d002346_P002	Maize	plastid	56.68	47.03
Os04t0612700-01	Rice	cytosol	57.65	46.7
TraesCS5D01G218100.2	Wheat	plastid	58.96	46.65
TraesCS5A01G213900.1	Wheat	plastid	58.96	46.53
TraesCS7D01G328300.1	Wheat	cytosol	61.89	46.34
PGSC0003DMT400066217	Potato	cytosol	53.42	45.94
PGSC0003DMT400054502	Potato	peroxisome	53.09	45.28
PGSC0003DMT400033637	Potato	peroxisome	53.09	45.28
OQU82308	Sorghum	cytosol	56.03	45.26
TraesCS5B01G202800.1	Wheat	plastid	61.56	44.89
Os03t0223200-00	Rice	cytosol	55.7	44.76
OQU89465	Sorghum	plastid	60.91	44.74
TraesCS5D01G210700.1	Wheat	plastid	60.59	44.18
TraesCS5A01G205600.1	Wheat	plastid	60.59	44.08
PGSC0003DMT400059621	Potato	cytosol	50.16	42.54
VIT_00s0371g00020.t01	Wine grape	cytosol	7.49	41.82
PGSC0003DMT400012845	Potato	cytosol	51.79	41.41
Os09t0400000-00	Rice	plasma membrane	58.63	41.28
Zm00001d020402_P001	Maize	plastid	13.68	34.43
PGSC0003DMT400043759	Potato	cytosol	8.79	30.34

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.1	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:M1BA03	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF08240	EnsemblPlantsGene:PGSC0003DMG400015678	PGSC:PGSC0003DMG400015678	EnsemblPlants:PGSC0003DMT400040520	InterPro:PKS_ER
ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF26	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
UniParc:UPI00029508B5	SEG:seg	:	:	:	:

Description

10-hydroxygeraniol oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400015678]

Coordinates

chr11:-:1590924..1593453

Molecular Weight (calculated)

33785.1 Da

IEP (calculated)

8.010

GRAVY (calculated)

-0.131

Length

307 amino acids

Sequence
(BLAST)

001: MAKSFENEHP IKAFGWATRD TSGVLSPFNF SRRVTGEKDV QFKVMYCGIC HSDLHQLKNE WGNSKYPMVP GHEVVGVVIE VGSKVEKFKV GDKVGVGCMV
101: GSCRKCENCS VDLENYCPRQ IPTYNGYSLD GTFTFGGYSD MMSFEYFGLD KPGMHIGVVG LGGLGHMAVK FAKAFGTKVT VISTSANKKQ EAIERLGADS
201: FLISRDPEQM KAAMNTLDGI IDTVSAVHPI LPLLMLMKSH GRKLVAGSCI GGMKETQEML DFAAKHNITP DIEVVPMDYV NTALERLLKS DVKYRFVLDI
301: GNTLNKK

Best Arabidopsis Sequence Match ( AT2G21890.1 )
(BLAST)

001: MVDQNRAFGW AANDESGVLS PFHFSRRENG ENDVTVKILF CGVCHSDLHT IKNHWGFSRY PIIPGHEIVG IATKVGKNVT KFKEGDRVGV GVIIGSCQSC
101: ESCNQDLENY CPKVVFTYNS RSSDGTRNQG GYSDVIVVDH RFVLSIPDGL PSDSGAPLLC AGITVYSPMK YYGMTKESGK RLGVNGLGGL GHIAVKIGKA
201: FGLRVTVISR SSEKEREAID RLGADSFLVT TDSQKMKEAV GTMDFIIDTV SAEHALLPLF SLLKVSGKLV ALGLLEKPLD LPIFPLVLGR KMVGGSQIGG
301: MKETQEMLEF CAKHKIVSDI ELIKMSDINS AMDRLVKSDV RYRFVIDVAN SLLPESSAEI LTEHVDHGVS ITSRF

Arabidopsis Description

CAD3Cinnamyl alcohol dehydrogenase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.