Factsheet for PGSC0003DMT400024956

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043757	Potato	cytosol	70.83	73.28
VIT_00s0371g00020.t01	Wine grape	cytosol	30.83	67.27
PGSC0003DMT400041571	Potato	cytosol	64.17	55.4
PGSC0003DMT400080827	Potato	cytosol	77.5	43.87
PGSC0003DMT400043759	Potato	cytosol	32.5	43.82
Zm00001d020401_P001	Maize	cytosol	55.0	28.57
PGSC0003DMT400040518	Potato	cytosol	80.0	26.97
PGSC0003DMT400041573	Potato	cytosol	71.67	26.79
PGSC0003DMT400013704	Potato	cytosol	77.5	26.12
PGSC0003DMT400040520	Potato	cytosol	60.83	23.78
PGSC0003DMT400041578	Potato	cytosol	65.83	21.88
PGSC0003DMT400041566	Potato	cytosol	65.0	21.73
PGSC0003DMT400047475	Potato	cytosol	60.83	20.28
Bra011798.1-P	Field mustard	cytosol	60.0	19.89
CDX75687	Canola	cytosol	60.0	19.89
CDX69347	Canola	cytosol	59.17	19.61
TraesCS6A01G369800.1	Wheat	cytosol, golgi	56.67	18.63
TraesCS6B01G406000.1	Wheat	cytosol	56.67	18.58
TraesCS6B01G406200.1	Wheat	cytosol	56.67	18.58
TraesCS6D01G353700.1	Wheat	cytosol	56.67	18.58
TraesCS5D01G210600.1	Wheat	cytosol	55.0	18.54
TraesCS6A01G370100.1	Wheat	cytosol	55.0	18.54
TraesCS7A01G380100.1	Wheat	cytosol	56.67	18.48
TraesCS7D01G376600.1	Wheat	cytosol	56.67	18.48
Zm00001d024314_P001	Maize	cytosol	55.0	18.38
TraesCS7B01G282100.1	Wheat	cytosol	56.67	18.38
TraesCS6B01G406300.1	Wheat	cytosol	55.83	18.36
TraesCS5B01G202700.1	Wheat	cytosol	54.17	18.26
TraesCS6D01G353400.1	Wheat	cytosol	55.83	18.21
AT4G37970.1	Thale cress	cytosol	55.0	18.18
TraesCS6D01G353300.1	Wheat	cytosol	55.0	18.08
TraesCS5A01G205700.1	Wheat	cytosol	53.33	17.98
TraesCS7B01G232400.1	Wheat	cytosol, plastid	55.83	17.77
TraesCS5D01G218100.2	Wheat	plastid	56.67	17.53
TraesCS7A01G350500.1	Wheat	cytosol	54.17	17.52
OQU80077	Sorghum	cytosol	54.17	17.43
TraesCS5A01G213900.1	Wheat	plastid	55.83	17.22
TraesCS5B01G209800.2	Wheat	plastid	55.83	17.22
EER96708	Sorghum	cytosol	51.67	17.22
EER98869	Sorghum	cytosol	51.67	17.13
Zm00001d020400_P001	Maize	plastid	51.67	16.99
Os03t0223200-00	Rice	cytosol	53.33	16.75
Os09t0399800-01	Rice	cytosol	50.0	16.71
TraesCS7D01G184500.1	Wheat	cytosol	49.17	16.53
TraesCS7A01G183000.1	Wheat	cytosol	49.17	16.53
Os10t0430200-01	Rice	cytosol	50.0	16.39
Os09t0400300-01	Rice	plasma membrane	47.5	16.38
Os09t0400400-01	Rice	cytosol	49.17	16.3
PGSC0003DMT400059621	Potato	cytosol	49.17	16.3
PGSC0003DMT400033637	Potato	peroxisome	48.33	16.11
TraesCS7D01G328300.1	Wheat	cytosol	55.0	16.1
PGSC0003DMT400054502	Potato	peroxisome	47.5	15.83
OQU89465	Sorghum	plastid	53.33	15.31
PGSC0003DMT400066217	Potato	cytosol	45.0	15.13
Os04t0612700-01	Rice	cytosol	47.5	15.04
TraesCS5B01G202800.1	Wheat	plastid	51.67	14.73
TraesCS2D01G422400.1	Wheat	cytosol	45.0	14.67
TraesCS2A01G424600.1	Wheat	cytosol	45.0	14.63
Zm00001d002346_P002	Maize	plastid	45.0	14.59
TraesCS5D01G210700.1	Wheat	plastid	50.83	14.49
TraesCS5A01G205600.1	Wheat	plastid	50.83	14.46
TraesCS2B01G444200.2	Wheat	cytosol	44.17	14.36
PGSC0003DMT400012845	Potato	cytosol	45.83	14.32
OQU82308	Sorghum	cytosol	43.33	13.68
Os09t0400000-00	Rice	plasma membrane	48.33	13.3
Os08t0270400-00	Rice	cytosol	19.17	7.57
PGSC0003DMT400024954	Potato	cytosol	10.83	4.85
PGSC0003DMT400041563	Potato	cytosol	2.5	1.21
VIT_00s0371g00010.t01	Wine grape	cytosol	0.0	0.0
TraesCS7D01G184600.1	Wheat	cytosol	0.0	0.0
Zm00001d020402_P001	Maize	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400024956	EnsemblPlantsGene:PGSC0003DMG400009638	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR42683
PANTHER:PTHR42683:SF27	PGSC:PGSC0003DMG400009638	SUPFAM:SSF51735	UniParc:UPI0002967D08	UniProt:M1AKU6	MapMan:50.1.1

Description

Sinapyl alcohol dehydrogenase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400009638]

Coordinates

chr00:-:20975212..20976234

Molecular Weight (calculated)

12983.1 Da

IEP (calculated)

6.252

GRAVY (calculated)

0.177

Length

120 amino acids

Sequence
(BLAST)

001: MQAAGGSLDG IIDTVSAVHP IFPLLNLLKT NGKLVMVGAP EKPLELPVFP LLSGRKLVGG SAIGGVKEMQ EMVSFEEKHN ITPDVEVVPM EYVNTVVERL
101: VKSDVKYHFV LDIGNTLKKS

Best Arabidopsis Sequence Match ( AT4G39330.1 )
(BLAST)

001: MAKSPETEHP NKVFGWGARD KSGVLSPFHF SRRDNGENDV TVKILFCGVC HTDLHTIKND WGYSYYPVVP GHEIVGIATK VGKNVTKFKE GDRVGVGVIS
101: GSCQSCESCD QDLENYCPQM SFTYNAIGSD GTKNYGGYSE NIVVDQRFVL RFPENLPSDS GAPLLCAGIT VYSPMKYYGM TEAGKHLGVA GLGGLGHVAV
201: KIGKAFGLKV TVISSSSTKA EEAINHLGAD SFLVTTDPQK MKAAIGTMDY IIDTISAVHA LYPLLGLLKV NGKLIALGLP EKPLELPMFP LVLGRKMVGG
301: SDVGGMKETQ EMLDFCAKHN ITADIELIKM DEINTAMERL AKSDVRYRFV IDVANSLSPP

Arabidopsis Description

CAD9Probable cinnamyl alcohol dehydrogenase 9 [Source:UniProtKB/Swiss-Prot;Acc:P42734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.