Factsheet for PGSC0003DMT400024954

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0371g00010.t01	Wine grape	cytosol	18.28	70.0
PGSC0003DMT400041563	Potato	cytosol	61.94	66.94
TraesCS7D01G184600.1	Wheat	cytosol	45.9	60.89
PGSC0003DMT400040518	Potato	cytosol	76.49	57.58
Solyc11g011330.1.1	Tomato	cytosol	75.75	57.02
PGSC0003DMT400013704	Potato	cytosol	73.88	55.62
PGSC0003DMT400040520	Potato	cytosol	61.57	53.75
PGSC0003DMT400041566	Potato	cytosol	65.3	48.75
PGSC0003DMT400041578	Potato	cytosol	63.06	46.81
PGSC0003DMT400041573	Potato	cytosol	54.48	45.48
PGSC0003DMT400080827	Potato	cytosol	34.7	43.87
Os08t0270400-00	Rice	cytosol	48.88	43.09
AT4G37970.1	Thale cress	cytosol	57.46	42.42
CDX69347	Canola	cytosol	56.72	41.99
CDX75687	Canola	cytosol	55.97	41.44
Bra011798.1-P	Field mustard	cytosol	55.97	41.44
PGSC0003DMT400047475	Potato	cytosol	54.85	40.83
EER98869	Sorghum	cytosol	53.36	39.5
TraesCS7D01G184500.1	Wheat	cytosol	52.61	39.5
TraesCS5A01G205700.1	Wheat	cytosol	52.24	39.33
TraesCS5B01G202700.1	Wheat	cytosol	51.87	39.04
TraesCS7A01G183000.1	Wheat	cytosol	51.87	38.94
Os09t0400400-01	Rice	cytosol	52.24	38.67
EER96708	Sorghum	cytosol	51.87	38.61
Os10t0430200-01	Rice	cytosol	52.61	38.52
TraesCS5D01G210600.1	Wheat	cytosol	51.12	38.48
Zm00001d020400_P001	Maize	plastid	51.87	38.08
Os09t0399800-01	Rice	cytosol	50.75	37.88
Zm00001d024314_P001	Maize	cytosol	50.0	37.33
TraesCS6D01G353300.1	Wheat	cytosol	50.75	37.26
TraesCS6B01G406300.1	Wheat	cytosol	50.75	37.26
TraesCS6A01G369800.1	Wheat	cytosol, golgi	50.75	37.26
TraesCS6D01G353400.1	Wheat	cytosol	51.12	37.23
TraesCS6D01G353700.1	Wheat	cytosol	50.75	37.16
TraesCS6B01G406000.1	Wheat	cytosol	50.75	37.16
TraesCS6B01G406200.1	Wheat	cytosol	50.37	36.89
Os09t0400300-01	Rice	plasma membrane	47.76	36.78
TraesCS2D01G422400.1	Wheat	cytosol	50.37	36.68
TraesCS2A01G424600.1	Wheat	cytosol	50.37	36.59
TraesCS6A01G370100.1	Wheat	cytosol	48.51	36.52
TraesCS2B01G444200.2	Wheat	cytosol	50.0	36.31
TraesCS7A01G350500.1	Wheat	cytosol	50.0	36.12
TraesCS7B01G282100.1	Wheat	cytosol	49.63	35.95
OQU80077	Sorghum	cytosol	49.63	35.66
Os04t0612700-01	Rice	cytosol	50.37	35.62
TraesCS7D01G376600.1	Wheat	cytosol	48.88	35.6
TraesCS7A01G380100.1	Wheat	cytosol	48.88	35.6
TraesCS7B01G232400.1	Wheat	cytosol, plastid	50.0	35.54
TraesCS5B01G209800.2	Wheat	plastid	51.49	35.48
Zm00001d002346_P002	Maize	plastid	48.88	35.41
TraesCS5D01G218100.2	Wheat	plastid	50.75	35.05
TraesCS5A01G213900.1	Wheat	plastid	50.75	34.96
OQU82308	Sorghum	cytosol	49.25	34.74
PGSC0003DMT400066217	Potato	cytosol	45.9	34.45
PGSC0003DMT400054502	Potato	peroxisome	46.27	34.44
TraesCS5B01G202800.1	Wheat	plastid	54.1	34.44
Zm00001d020402_P001	Maize	plastid	15.67	34.43
OQU89465	Sorghum	plastid	53.36	34.21
TraesCS5D01G210700.1	Wheat	plastid	53.73	34.2
TraesCS5A01G205600.1	Wheat	plastid	53.73	34.12
PGSC0003DMT400033637	Potato	peroxisome	45.52	33.89
PGSC0003DMT400059621	Potato	cytosol	45.52	33.7
PGSC0003DMT400012845	Potato	cytosol	48.13	33.59
TraesCS7D01G328300.1	Wheat	cytosol	50.0	32.68
Zm00001d020401_P001	Maize	cytosol	27.99	32.47
Os03t0223200-00	Rice	cytosol	46.27	32.46
Os09t0400000-00	Rice	plasma membrane	52.24	32.11
PGSC0003DMT400041571	Potato	cytosol	6.72	12.95
PGSC0003DMT400043757	Potato	cytosol	4.85	11.21
PGSC0003DMT400024956	Potato	cytosol	4.85	10.83
VIT_00s0371g00020.t01	Wine grape	cytosol	0.75	3.64
PGSC0003DMT400043759	Potato	cytosol	0.37	1.12

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.1	InterPro:ADH_N	InterPro:ADH_Zn_CS	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491
GO:GO:0055114	InterPro:GroES-like_sf	UniProt:M1AKU4	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	EnsemblPlantsGene:PGSC0003DMG400009637
PGSC:PGSC0003DMG400009637	EnsemblPlants:PGSC0003DMT400024954	ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF26	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI000296FB94	SEG:seg	:	:	:

Description

Sinapyl alcohol dehydrogenase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400009637]

Coordinates

chr00:-:20966322..20968887

Molecular Weight (calculated)

29934.0 Da

IEP (calculated)

8.315

GRAVY (calculated)

-0.210

Length

268 amino acids

Sequence
(BLAST)

001: MEKSHENVEA FGWAARDTSG VLSPFNFSRR VTGEKDVQFK VMYCGICHSD LHQLKNEWSN SIYPLVPGHE VVGVVTEVGS KVEKFKIGDK VGVGCLVGSC
101: RKCENCNNDL KNYCSDMILT YNGVDTDGTT TYGGYSDIIL TNEHYVVHWP ENLPIEAAPL LCARITTYSP LRYYGLDKPG MHIDVVGLGG LGHMAVKFAM
201: AFGTKVTVIS TSVSKKDKAI DRCNIRQFKM NMKKLEFGNS HFWKNLKSGN LAVQNLEIWL SSKIWKFG

Best Arabidopsis Sequence Match ( AT4G37970.3 )
(BLAST)

001: MERLSGEKEQ SVEAFGWAAR DSSGHLSPFV FSRRKTGEEE VRVKVLYCGI CHSDLHCLKN EWHSSIYPLV PGHEIIGEVS EIGNKVSKFN LGDKVGVGCI
101: VDSCRTCESC REDQENYCTK AIATYNGVHH DGTINYGGYS DHIVVDERYA VKIPHTLPLV SAAPLLCAGI SMYSPMKYFG LTGPDKHVGI VGLGGLGHIG
201: VRFAKAFGTK VTVVSSTTGK SKDALDTLGA DGFLVSTDED QMKVSTLFRL QWELWMA

Arabidopsis Description

CAD6Probable cinnamyl alcohol dehydrogenase 6 [Source:UniProtKB/Swiss-Prot;Acc:O65621]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.