Factsheet for PGSC0003DMT400041563

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0371g00010.t01	Wine grape	cytosol	22.58	80.0
Solyc11g010990.1.1	Tomato	cytosol	94.76	65.46
PGSC0003DMT400024954	Potato	cytosol	66.94	61.94
PGSC0003DMT400041573	Potato	cytosol	77.82	60.12
TraesCS7D01G184600.1	Wheat	cytosol	48.79	59.9
PGSC0003DMT400040520	Potato	cytosol	66.53	53.75
PGSC0003DMT400040518	Potato	cytosol	75.0	52.25
PGSC0003DMT400041566	Potato	cytosol	75.4	52.09
PGSC0003DMT400013704	Potato	cytosol	73.39	51.12
PGSC0003DMT400041578	Potato	cytosol	69.76	47.92
Os08t0270400-00	Rice	cytosol	55.65	45.39
PGSC0003DMT400047475	Potato	cytosol	63.31	43.61
TraesCS5B01G202700.1	Wheat	cytosol	56.85	39.61
Os09t0400400-01	Rice	cytosol	57.66	39.5
TraesCS7A01G183000.1	Wheat	cytosol	56.85	39.5
TraesCS7D01G184500.1	Wheat	cytosol	56.85	39.5
AT4G37970.1	Thale cress	cytosol	57.66	39.39
Os09t0399800-01	Rice	cytosol	56.85	39.28
EER98869	Sorghum	cytosol	57.26	39.23
CDX69347	Canola	cytosol	57.26	39.23
TraesCS5A01G205700.1	Wheat	cytosol	56.05	39.04
TraesCS5D01G210600.1	Wheat	cytosol	56.05	39.04
TraesCS6D01G353300.1	Wheat	cytosol	57.26	38.9
Zm00001d024314_P001	Maize	cytosol	56.05	38.72
Bra011798.1-P	Field mustard	cytosol	56.45	38.67
CDX75687	Canola	cytosol	56.45	38.67
TraesCS6A01G369800.1	Wheat	cytosol, golgi	56.85	38.63
TraesCS6B01G406300.1	Wheat	cytosol	56.85	38.63
EER96708	Sorghum	cytosol	55.65	38.33
TraesCS6B01G406000.1	Wheat	cytosol	56.45	38.25
Os10t0430200-01	Rice	cytosol	56.05	37.98
TraesCS2A01G424600.1	Wheat	cytosol	56.45	37.94
Os09t0400300-01	Rice	plasma membrane	53.23	37.93
Zm00001d020400_P001	Maize	plastid	55.65	37.81
TraesCS2D01G422400.1	Wheat	cytosol	56.05	37.77
TraesCS2B01G444200.2	Wheat	cytosol	56.05	37.67
TraesCS6D01G353400.1	Wheat	cytosol	55.65	37.5
TraesCS7A01G350500.1	Wheat	cytosol	56.05	37.47
TraesCS6D01G353700.1	Wheat	cytosol	55.24	37.43
Zm00001d002346_P002	Maize	plastid	55.65	37.3
PGSC0003DMT400080827	Potato	cytosol	31.85	37.26
TraesCS6B01G406200.1	Wheat	cytosol	54.84	37.16
OQU82308	Sorghum	cytosol	56.85	37.11
TraesCS6A01G370100.1	Wheat	cytosol	53.23	37.08
TraesCS5B01G209800.2	Wheat	plastid	57.66	36.76
OQU80077	Sorghum	cytosol	55.24	36.73
PGSC0003DMT400066217	Potato	cytosol	52.42	36.41
PGSC0003DMT400054502	Potato	peroxisome	52.82	36.39
TraesCS5D01G218100.2	Wheat	plastid	56.85	36.34
TraesCS7B01G232400.1	Wheat	cytosol, plastid	55.24	36.34
TraesCS7B01G282100.1	Wheat	cytosol	54.03	36.22
Os04t0612700-01	Rice	cytosol	55.24	36.15
TraesCS5A01G213900.1	Wheat	plastid	56.45	35.99
TraesCS7D01G376600.1	Wheat	cytosol	53.23	35.87
TraesCS7A01G380100.1	Wheat	cytosol	53.23	35.87
PGSC0003DMT400033637	Potato	peroxisome	52.02	35.83
Zm00001d020402_P001	Maize	plastid	17.34	35.25
TraesCS5B01G202800.1	Wheat	plastid	59.68	35.15
TraesCS5D01G210700.1	Wheat	plastid	58.87	34.68
Os03t0223200-00	Rice	cytosol	53.23	34.55
OQU89465	Sorghum	plastid	58.06	34.45
TraesCS5A01G205600.1	Wheat	plastid	58.47	34.36
Os09t0400000-00	Rice	plasma membrane	60.08	34.17
PGSC0003DMT400012845	Potato	cytosol	52.42	33.85
PGSC0003DMT400059621	Potato	cytosol	48.79	33.43
TraesCS7D01G328300.1	Wheat	cytosol	55.24	33.41
Zm00001d020401_P001	Maize	cytosol	28.63	30.74
PGSC0003DMT400041571	Potato	cytosol	3.23	5.76
PGSC0003DMT400043757	Potato	cytosol	1.21	2.59
PGSC0003DMT400024956	Potato	cytosol	1.21	2.5
PGSC0003DMT400043759	Potato	cytosol	0.4	1.12
VIT_00s0371g00020.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.1	InterPro:ADH_N	InterPro:ADH_Zn_CS	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491
GO:GO:0055114	InterPro:GroES-like_sf	UniProt:M1BBI9	InterPro:NAD(P)-bd_dom_sf	PFAM:PF08240	EnsemblPlantsGene:PGSC0003DMG401016112
PGSC:PGSC0003DMG401016112	EnsemblPlants:PGSC0003DMT400041563	ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF26	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI0002948778	SEG:seg	:	:	:

Description

10-hydroxygeraniol oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG401016112]

Coordinates

chr11:+:2015197..2016635

Molecular Weight (calculated)

27099.3 Da

IEP (calculated)

6.836

GRAVY (calculated)

-0.079

Length

248 amino acids

Sequence
(BLAST)

001: MAKSSHEIEH PIKAFGWAAR DTSGVLSPFN FSRRATGEND VQFKVLYCGI CHSDFHMLKN EWDNSKYPIV PGHEIVGVVT EVGSKVEKVK VGDNVGVGVI
101: VGSCRKCDSC TNDLEQYCSS SIGTYSTTYY DGTTTHGGYS DLMVANEHFV LRWPENLPMD AAPLLCAGIT TYSPLRYFGL DKPGLNIGVV GLGGLGHMAV
201: KFAKAFGCNV TVISTSINKK DEAIKHLGAN SFLISHDQEQ IRYFFSLV

Best Arabidopsis Sequence Match ( AT4G37980.1 )
(BLAST)

001: MGKVLEKEAF GLAAKDESGI LSPFSFSRRA TGEKDVRFKV LFCGICHTDL SMAKNEWGLT TYPLVPGHEI VGVVTEVGAK VKKFNAGDKV GVGYMAGSCR
101: SCDSCNDGDE NYCPKMILTS GAKNFDDTMT HGGYSDHMVC AEDFIIRIPD NLPLDGAAPL LCAGVTVYSP MKYHGLDKPG MHIGVVGLGG LGHVAVKFAK
201: AMGTKVTVIS TSERKRDEAV TRLGADAFLV SRDPKQMKDA MGTMDGIIDT VSATHPLLPL LGLLKNKGKL VMVGAPAEPL ELPVFPLIFG RKMVVGSMVG
301: GIKETQEMVD LAGKHNITAD IELISADYVN TAMERLAKAD VKYRFVIDVA NTMKPTP

Arabidopsis Description

CAD7ELI3-1 [Source:UniProtKB/TrEMBL;Acc:A0A178V3X8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.