Factsheet for PGSC0003DMT400043759

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043757	Potato	cytosol	49.44	37.93
PGSC0003DMT400024956	Potato	cytosol	43.82	32.5
PGSC0003DMT400041571	Potato	cytosol	38.2	24.46
Solyc05g024320.1.1	Tomato	cytosol	44.94	18.87
PGSC0003DMT400080827	Potato	cytosol	41.57	17.45
VIT_18s0001g01160.t01	Wine grape	mitochondrion	29.21	16.15
PGSC0003DMT400041573	Potato	cytosol	43.82	12.15
Zm00001d020401_P001	Maize	cytosol	31.46	12.12
PGSC0003DMT400040518	Potato	cytosol	44.94	11.24
PGSC0003DMT400013704	Potato	cytosol	42.7	10.67
PGSC0003DMT400041578	Potato	cytosol	39.33	9.7
PGSC0003DMT400041566	Potato	cytosol	37.08	9.19
PGSC0003DMT400047475	Potato	cytosol	37.08	9.17
PGSC0003DMT400040520	Potato	cytosol	30.34	8.79
PGSC0003DMT400054502	Potato	peroxisome	34.83	8.61
TraesCS7D01G376600.1	Wheat	cytosol	33.71	8.15
TraesCS7B01G282100.1	Wheat	cytosol	33.71	8.11
PGSC0003DMT400033637	Potato	peroxisome	32.58	8.06
TraesCS7A01G380100.1	Wheat	cytosol	32.58	7.88
TraesCS7B01G232400.1	Wheat	cytosol, plastid	32.58	7.69
TraesCS6A01G369800.1	Wheat	cytosol, golgi	31.46	7.67
TraesCS6B01G406000.1	Wheat	cytosol	31.46	7.65
TraesCS6B01G406200.1	Wheat	cytosol	31.46	7.65
TraesCS6D01G353700.1	Wheat	cytosol	31.46	7.65
Os03t0223200-00	Rice	cytosol	32.58	7.59
TraesCS6A01G370100.1	Wheat	cytosol	30.34	7.58
TraesCS7A01G350500.1	Wheat	cytosol	31.46	7.55
Zm00001d024314_P001	Maize	cytosol	30.34	7.52
EER96708	Sorghum	cytosol	30.34	7.5
TraesCS5D01G218100.2	Wheat	plastid	32.58	7.47
EER98869	Sorghum	cytosol	30.34	7.46
TraesCS5A01G213900.1	Wheat	plastid	32.58	7.46
TraesCS5B01G209800.2	Wheat	plastid	32.58	7.46
TraesCS6D01G353300.1	Wheat	cytosol	30.34	7.4
TraesCS6B01G406300.1	Wheat	cytosol	30.34	7.4
Zm00001d020400_P001	Maize	plastid	30.34	7.4
Os10t0430200-01	Rice	cytosol	30.34	7.38
TraesCS5A01G205700.1	Wheat	cytosol	29.21	7.3
PGSC0003DMT400066217	Potato	cytosol	29.21	7.28
OQU80077	Sorghum	cytosol	30.34	7.24
Os09t0400300-01	Rice	plasma membrane	28.09	7.18
PGSC0003DMT400059621	Potato	cytosol	29.21	7.18
TraesCS6D01G353400.1	Wheat	cytosol	29.21	7.07
TraesCS5D01G210600.1	Wheat	cytosol	28.09	7.02
TraesCS5B01G202700.1	Wheat	cytosol	28.09	7.02
Os09t0399800-01	Rice	cytosol	28.09	6.96
Os09t0400400-01	Rice	cytosol	28.09	6.91
TraesCS7D01G328300.1	Wheat	cytosol	31.46	6.83
PGSC0003DMT400012845	Potato	cytosol	29.21	6.77
TraesCS7A01G183000.1	Wheat	cytosol	26.97	6.72
OQU89465	Sorghum	plastid	31.46	6.7
TraesCS7D01G184500.1	Wheat	cytosol	25.84	6.44
TraesCS5D01G210700.1	Wheat	plastid	30.34	6.41
TraesCS5B01G202800.1	Wheat	plastid	30.34	6.41
TraesCS5A01G205600.1	Wheat	plastid	30.34	6.4
Os04t0612700-01	Rice	cytosol	26.97	6.33
TraesCS2D01G422400.1	Wheat	cytosol	24.72	5.98
TraesCS2B01G444200.2	Wheat	cytosol	24.72	5.96
TraesCS2A01G424600.1	Wheat	cytosol	24.72	5.96
Zm00001d002346_P002	Maize	plastid	24.72	5.95
Os09t0400000-00	Rice	plasma membrane	28.09	5.73
OQU82308	Sorghum	cytosol	23.6	5.53
Os08t0270400-00	Rice	cytosol	16.85	4.93
TraesCS7D01G184600.1	Wheat	cytosol	1.12	0.5
PGSC0003DMT400041563	Potato	cytosol	1.12	0.4
PGSC0003DMT400024954	Potato	cytosol	1.12	0.37
HORVU6Hr1G035410.1	Barley	cytosol	0.0	0.0
Zm00001d020402_P001	Maize	plastid	0.0	0.0
CDY63551	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400043759	EnsemblPlantsGene:PGSC0003DMG400016985	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR42683	PANTHER:PTHR42683:SF27
PGSC:PGSC0003DMG400016985	SUPFAM:SSF51735	UniParc:UPI000294CA60	UniProt:M1BF60	MapMan:35.1	:

Description

ELI3 [Source:PGSC_GENE;Acc:PGSC0003DMG400016985]

Coordinates

chr11:-:1411867..1412607

Molecular Weight (calculated)

9991.5 Da

IEP (calculated)

4.945

GRAVY (calculated)

0.506

Length

89 amino acids

Sequence
(BLAST)

1: MNTLDGIIDT VSVVHPILPL LMLMKSHGKL VMVGAPEKPV EFPVFPLLMV DINGDYATSV ELDGWGEIIG FESFFHPSAI YLFVRKWKM

Best Arabidopsis Sequence Match ( AT4G37970.1 )
(BLAST)

001: MERLSGEKEQ SVEAFGWAAR DSSGHLSPFV FSRRKTGEEE VRVKVLYCGI CHSDLHCLKN EWHSSIYPLV PGHEIIGEVS EIGNKVSKFN LGDKVGVGCI
101: VDSCRTCESC REDQENYCTK AIATYNGVHH DGTINYGGYS DHIVVDERYA VKIPHTLPLV SAAPLLCAGI SMYSPMKYFG LTGPDKHVGI VGLGGLGHIG
201: VRFAKAFGTK VTVVSSTTGK SKDALDTLGA DGFLVSTDED QMKAAMGTMD GIIDTVSASH SISPLIGLLK SNGKLVLLGA TEKPFDISAF SLILGRKSIA
301: GSGIGGMQET QEMIDFAAEH GIKAEIEIIS MDYVNTAMDR LAKGDVRYRF VIDISNTLAA TRS

Arabidopsis Description

CAD6Probable cinnamyl alcohol dehydrogenase 6 [Source:UniProtKB/Swiss-Prot;Acc:O65621]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.