CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39330.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98869	Sorghum	cytosol	77.55	20.99
EER96708	Sorghum	cytosol	76.53	20.83
OQU75994	Sorghum	cytosol	31.63	17.32
OQU89465	Sorghum	plastid	71.43	16.75
VIT_04s0044g00210.t01	Wine grape	cytosol	61.22	16.71
CDX76968	Canola	cytosol	60.2	16.48
AT4G39330.1	Thale cress	cytosol	60.2	16.39
Bra033613.1-P	Field mustard	cytosol	60.2	16.39
CDY56752	Canola	cytosol	60.2	16.39
KRH43378	Soybean	cytosol	59.18	16.29
CDY13791	Canola	cytosol	59.18	16.2
Bra031216.1-P	Field mustard	cytosol	59.18	16.2
PGSC0003DMT400047475	Potato	cytosol	59.18	16.11
KRH59514	Soybean	cytosol	59.18	16.11
CDX72704	Canola	cytosol	59.18	16.11
OQU80077	Sorghum	cytosol	60.2	15.82
VIT_04s0044g00190.t01	Wine grape	cytosol	57.14	15.6
EES10404	Sorghum	cytosol	56.12	15.19
AT2G21890.1	Thale cress	cytosol	56.12	14.67
AT2G21730.1	Thale cress	peroxisome	56.12	14.63
Solyc03g078440.2.1	Tomato	cytosol	56.12	14.07
OQU82308	Sorghum	cytosol	54.08	13.95
KXG29649	Sorghum	cytosol	50.0	13.42
EER88001	Sorghum	cytosol	47.96	13.28
OQU75993	Sorghum	cytosol	45.92	12.71
EER88002	Sorghum	cytosol	45.92	12.71
Solyc03g078430.1.1	Tomato	extracellular, plastid, vacuole	25.51	12.02
KXG19525	Sorghum	cytosol	45.92	10.77
OQU79199	Sorghum	cytosol	25.51	7.76

Protein Annotations

Gene3D:3.90.180.10	MapMan:35.1	InterPro:ADH_N	InterPro:ADH_Zn_CS	UniProt:C5XC50	EnsemblPlants:EER98870
ProteinID:EER98870	ProteinID:EER98870.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0055114	InterPro:GroES-like_sf	PFAM:PF08240
ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF15	EnsemblPlantsGene:SORBI_3002G195500	SUPFAM:SSF50129	UniParc:UPI0001A83F5C
RefSeq:XP_002462349.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:58401424..58401985

Molecular Weight (calculated)

10701.0 Da

IEP (calculated)

8.683

GRAVY (calculated)

-0.086

Length

98 amino acids

Sequence
(BLAST)

1: MAEGKGAHGW AARDVSGHLS PCHFSRRVQR DDDDVTIKVL FCGLCHTNLH VIKNEFGNTM YLVVPGHEVI GVVTDVGRGV TKFKAGDTVR GLLCRLRG

Best Arabidopsis Sequence Match ( AT4G39330.1 )
(BLAST)

001: MAKSPETEHP NKVFGWGARD KSGVLSPFHF SRRDNGENDV TVKILFCGVC HTDLHTIKND WGYSYYPVVP GHEIVGIATK VGKNVTKFKE GDRVGVGVIS
101: GSCQSCESCD QDLENYCPQM SFTYNAIGSD GTKNYGGYSE NIVVDQRFVL RFPENLPSDS GAPLLCAGIT VYSPMKYYGM TEAGKHLGVA GLGGLGHVAV
201: KIGKAFGLKV TVISSSSTKA EEAINHLGAD SFLVTTDPQK MKAAIGTMDY IIDTISAVHA LYPLLGLLKV NGKLIALGLP EKPLELPMFP LVLGRKMVGG
301: SDVGGMKETQ EMLDFCAKHN ITADIELIKM DEINTAMERL AKSDVRYRFV IDVANSLSPP

Arabidopsis Description

CAD9Probable cinnamyl alcohol dehydrogenase 9 [Source:UniProtKB/Swiss-Prot;Acc:P42734]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.