Factsheet for Solyc12g055820.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g048300.1.1	Tomato	cytosol	15.56	89.13
PGSC0003DMT400012845	Potato	cytosol	63.76	87.5
VIT_02s0025g03100.t01	Wine grape	cytosol	52.37	77.75
VIT_02s0025g03110.t01	Wine grape	cytosol	11.01	75.32
KRH21722	Soybean	cytosol	48.58	71.71
AT1G72680.1	Thale cress	cytosol	47.44	70.42
Bra016041.1-P	Field mustard	cytosol	47.06	70.06
Zm00001d045043_P001	Maize	cytosol	47.06	70.06
KRH10632	Soybean	cytosol	47.44	70.03
GSMUA_Achr1P00850_001	Banana	cytosol	47.25	69.75
EER88001	Sorghum	cytosol	46.68	69.49
OQU75993	Sorghum	cytosol	46.68	69.49
EER88002	Sorghum	cytosol	46.68	69.49
CDX72936	Canola	cytosol	45.73	68.66
GSMUA_Achr4P26450_001	Banana	cytosol	46.49	68.44
Os11t0622800-00	Rice	cytosol	45.92	68.36
Os10t0194200-01	Rice	plasma membrane, plastid	45.73	68.08
TraesCS3B01G485000.1	Wheat	cytosol	45.35	67.51
TraesCS3A01G448800.1	Wheat	cytosol	45.16	66.85
TraesCS3A01G448400.1	Wheat	cytosol	44.78	66.67
HORVU3Hr1G097140.1	Barley	cytosol	44.97	66.57
HORVU3Hr1G097160.1	Barley	cytosol	44.59	66.38
TraesCS3B01G484500.1	Wheat	cytosol	44.59	66.38
OQU79199	Sorghum	cytosol	39.47	64.6
TraesCS3D01G440900.1	Wheat	cytosol	44.4	64.29
CDY72501	Canola	cytosol	22.58	63.64
HORVU3Hr1G097060.1	Barley	cytosol, plastid	18.41	63.4
KXG19525	Sorghum	cytosol	47.44	59.81
TraesCS3D01G441200.1	Wheat	extracellular, golgi	46.87	57.98
Solyc11g011330.1.1	Tomato	cytosol	35.67	52.81
Solyc11g011340.1.1	Tomato	cytosol	35.86	52.65
Solyc11g010960.1.1	Tomato	cytosol	34.72	50.97
Solyc11g010990.1.1	Tomato	cytosol	34.54	50.7
Solyc11g010980.1.1	Tomato	cytosol	33.78	49.58
Solyc03g078430.1.1	Tomato	extracellular, plastid, vacuole	19.35	49.04
Solyc03g078440.2.1	Tomato	cytosol	35.48	47.83
Solyc04g048960.1.1	Tomato	endoplasmic reticulum, extracellular	14.61	47.53
Solyc02g030480.2.1	Tomato	peroxisome	32.26	47.22
Solyc02g069250.2.1	Tomato	peroxisome	32.07	46.94
Solyc01g107590.2.1	Tomato	cytosol, extracellular	30.17	44.54
Solyc08g014360.1.1	Tomato	plastid	31.69	43.95
OQU75994	Sorghum	cytosol	14.8	43.58
Solyc05g024320.1.1	Tomato	cytosol	16.13	40.09
Zm00001d002250_P001	Maize	plastid	46.3	7.79

Protein Annotations

Gene3D:3.30.70.100	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.1	InterPro:ADH_C	InterPro:ADH_N
InterPro:ADH_Zn_CS	ncoils:Coil	InterPro:D-isomer_DH_CS1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0030001
GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
UniProt:K4DFR3	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF00403	PFAM:PF08240	InterPro:PKS_ER
ScanProsite:PS00059	ScanProsite:PS00065	PFscan:PS50846	PANTHER:PTHR42683	PANTHER:PTHR42683:SF17	SMART:SM00829
SUPFAM:SSF50129	SUPFAM:SSF51735	SUPFAM:SSF55008	EnsemblPlantsGene:Solyc12g055820.1	EnsemblPlants:Solyc12g055820.1.1	UniParc:UPI0002769D19
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:61816278..61822716

Molecular Weight (calculated)

58461.6 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.026

Length

527 amino acids

Sequence
(BLAST)

001: MPRGRPLSLQ TVELKVRMCC PGCERVVKDA VLKLRGVDSA EIDVEMEKVT VIGYVDRKKV LKAVRRSGKR AEFWPYPNPP LYFTSSNNYF KDTTIEYKES
101: YNYWRHGYNA TDKYGTLPIT QRGDDKVSNL FNDDNVYSCS IIVNPSQGSS NFFIFHFPSI SSLFLLPSRI IVMTFASANE NCLGWAARDP SGVLSPYEFN
201: RRVVSSDDVR LDIAFCGMCF ADVIWTKNIL GTSKYPLVPG HEITGIVREV GADVKHFKIG DHVGVGTYIN SCRECEYCCD ALEVHCSKGA IYTFDGIDVD
301: GTVTKGGYSS YIVVNERYCF RIPENYPLAS AAPLLCAGIT VYTPMIKHNM NQPGKSLGVV GLGGLGHLAV KFGKAFGMKV TVFSTSISKR EEAVNRLGAD
401: KFVISSDEQQ MMALSKSFDF IINTASGDIP FDTYLSLLKT AGVLVLVGFP SEVKFIPGNL ILGMKSIVGS VTGGTKQTQE MLDFCASHKI YPEIEVVPIQ
501: YVNEALERLI KKDVKYRFVI DVANSLK

Best Arabidopsis Sequence Match ( AT1G72680.1 )
(BLAST)

001: MSSSESVENE CMCWAARDPS GLLSPHTITR RSVTTDDVSL TITHCGVCYA DVIWSRNQHG DSKYPLVPGH EIAGIVTKVG PNVQRFKVGD HVGVGTYVNS
101: CRECEYCNEG QEVNCAKGVF TFNGIDHDGS VTKGGYSSHI VVHERYCYKI PVDYPLESAA PLLCAGITVY APMMRHNMNQ PGKSLGVIGL GGLGHMAVKF
201: GKAFGLSVTV FSTSISKKEE ALNLLGAENF VISSDHDQMK ALEKSLDFLV DTASGDHAFD PYMSLLKIAG TYVLVGFPSE IKISPANLNL GMRMLAGSVT
301: GGTKITQQML DFCAAHKIYP NIEVIPIQKI NEALERVVKK DIKYRFVIDI KNSLK

Arabidopsis Description

CAD1CAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WLT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.