CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91021
KRG95373
KRH35742
KRH49040
KRH67057
KRH67059
KRH71867
KRH74166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	KRH49040	AT4G29510.1	21798944
AT1G26110.1	KRH74166	AT4G29510.1	21798944
AT1G26110.1	KRG91021	AT4G34230.1	21798944
AT1G26110.1	KRH35742	AT4G34230.1	21798944
AT1G26110.1	KRG95373	AT5G06770.1	21798944
AT1G26110.1	KRH67057	AT5G06770.1	21798944
AT1G26110.1	KRH67059	AT5G06770.1	21798944
AT1G26110.1	KRH71867	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70630	Soybean	nucleus	89.53	88.23
KRH62823	Soybean	nucleus	88.38	87.1
KRH70633	Soybean	nucleus	86.25	85.55
KRG93865	Soybean	cytosol	6.55	76.92
Zm00001d051566_P001	Maize	nucleus	9.82	66.67
VIT_01s0011g02820.t01	Wine grape	nucleus	63.01	62.5
PGSC0003DMT400002103	Potato	nucleus	58.59	59.87
Solyc05g009980.2.1	Tomato	nucleus	56.3	57.43
AT1G26110.1	Thale cress	nucleus	57.12	57.12
CDY20530	Canola	nucleus	55.48	56.31
GSMUA_Achr1P20740_001	Banana	nucleus	53.85	55.86
Bra011009.1-P	Field mustard	nucleus	54.17	55.44
CDY36091	Canola	nucleus	53.68	54.94
CDY51127	Canola	nucleus	52.54	54.87
CDY55955	Canola	nucleus	53.03	54.36
GSMUA_Achr2P07060_001	Banana	nucleus	49.92	51.43
GSMUA_Achr9P00760_001	Banana	nucleus	50.25	51.08
Os01t0111200-01	Rice	nucleus	46.81	46.13
Zm00001d040142_P001	Maize	nucleus, plastid	45.99	43.43
EES02617	Sorghum	nucleus, plastid	46.81	43.2
Zm00001d008439_P001	Maize	plasma membrane	45.83	43.14
HORVU3Hr1G000880.1	Barley	nucleus	46.15	42.73
TraesCS3A01G006100.1	Wheat	nucleus	45.99	42.38
TraesCS3D01G004500.1	Wheat	plastid	45.34	41.72
Zm00001d027310_P001	Maize	nucleus, plastid	18.66	36.54
KRH76455	Soybean	nucleus	32.08	34.75
KRH39773	Soybean	endoplasmic reticulum	29.3	30.39

Protein Annotations

EntrezGene:100782890	Gene3D:2.30.30.100	MapMan:35.1	EMBL:ACUP02000373	InterPro:DFDF	InterPro:FDF_dom
InterPro:FFD_box	EnsemblPlantsGene:GLYMA_01G089900	UniProt:I1J6S1	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768
EnsemblPlants:KRH75529	ProteinID:KRH75529	ProteinID:KRH75529.1	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	PFAM:PF09532
PFAM:PF12701	PFscan:PS51512	PFscan:PS51513	PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10
SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	InterPro:TFG_box	UniParc:UPI00023BB944	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:27179501..27185283

Molecular Weight (calculated)

64600.4 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.500

Length

611 amino acids

Sequence
(BLAST)

001: MASETASRSS SAADSYIGSL ISLTSKSEIR YEGILYNINT EESSIGLRNV RSFGTEGRKK DGPQIPPGDK VYEYILFRGT DIKDLQVKSS PPVQPIPQVN
101: NDPAIIQSHY PHPVSTSTSL PSAVSGSLTD PSSHTTQLGL PGANFQGPLP LYQPGGNIGS WGASPPAPNA NGGRLAMPPM YWQGYYGAPN GLPQLHQQSL
201: LQPPPGLSMP SSMQQPMQYP NFTPSLPNVS SNLPELPSSL LPVSASIPSI TSASLPPAPS ALAPAPSALP PAPSSLSSAS SALSSVPSVT LASEILPVSV
301: TNKAPIVSTS AAMLASNLLS LTISGPDINA IVPPISRKLH AISGSSLPYQ TVSQLSSTVL GSSTSIHTET SAPSLVTPGQ LLQPGPSIVS SAQPSQAPHK
401: DVEVVQVSST SSPEPSVPVS AETQPPILPL PVTSRPSYRP GGAPSQTHHG YNYRGRGRGR GTGGLHPVTK FTEDFDFMAM NEKFKKDEVW GHLGKSKSHS
501: KEKDGEENAF DEDYQDEDND DVSNIEVKQP IYNKDDFFDS LSSNVHGNAS QNGRTRYSEQ IKIDTETFGD FVRHRGGRGG RGGRTRGGYY GRGGYGYNGR
601: GRGRGMPSRN L

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.