Factsheet for GSMUA_Achr2P07060_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19650_001
GSMUA_Achr4P06150_001
GSMUA_Achr4P12970_001
GSMUA_Achr6P22570_001
GSMUA_Achr7P20530_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	GSMUA_Achr6P22570_001	AT4G29510.1	21798944
AT1G26110.1	GSMUA_Achr4P06150_001	AT4G34230.1	21798944
AT1G26110.1	GSMUA_Achr4P12970_001	AT4G34230.1	21798944
AT1G26110.1	GSMUA_Achr1P19650_001	AT5G06770.1	21798944
AT1G26110.1	GSMUA_Achr7P20530_001	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20740_001	Banana	nucleus	73.52	74.02
VIT_02s0087g00680.t01	Wine grape	cytosol	10.46	73.81
KRG93865	Soybean	cytosol	5.73	65.38
GSMUA_Achr9P00760_001	Banana	nucleus	64.25	63.39
Zm00001d051566_P001	Maize	nucleus	9.11	60.0
VIT_01s0011g02820.t01	Wine grape	nucleus	57.34	55.19
PGSC0003DMT400002103	Potato	nucleus	52.95	52.51
Solyc05g009980.2.1	Tomato	nucleus	51.94	51.42
KRH70633	Soybean	nucleus	53.29	51.3
Os01t0111200-01	Rice	nucleus	53.63	51.29
KRH70630	Soybean	nucleus	52.95	50.65
KRH62823	Soybean	nucleus	52.61	50.32
KRH75529	Soybean	nucleus	51.43	49.92
AT1G26110.1	Thale cress	nucleus	48.4	46.97
Solyc08g075300.2.1	Tomato	nucleus, plastid	24.79	46.37
CDY36091	Canola	nucleus	46.21	45.9
Zm00001d008439_P001	Maize	plasma membrane	50.08	45.76
CDY51127	Canola	nucleus	44.86	45.47
EES02617	Sorghum	nucleus, plastid	50.76	45.47
CDY55955	Canola	nucleus	45.53	45.3
Bra011009.1-P	Field mustard	nucleus	45.53	45.23
CDY20530	Canola	nucleus	45.53	44.85
Zm00001d040142_P001	Maize	nucleus, plastid	48.23	44.2
TraesCS3A01G006100.1	Wheat	nucleus	49.41	44.19
HORVU3Hr1G000880.1	Barley	nucleus	48.74	43.79
TraesCS3D01G004500.1	Wheat	plastid	48.74	43.52
Zm00001d027310_P001	Maize	nucleus, plastid	19.39	36.86
KRH76455	Soybean	nucleus	33.22	34.93
CDX87795	Canola	nucleus	26.98	31.13
Solyc03g119850.1.1	Tomato	mitochondrion	22.77	31.11
CDY70855	Canola	plastid	12.98	30.92
AT5G45330.1	Thale cress	nucleus, plastid	29.34	30.47
CDY68331	Canola	nucleus, plastid	26.64	30.21
KRH39773	Soybean	endoplasmic reticulum	29.85	30.05
Bra021964.1-P	Field mustard	nucleus, plastid	26.98	29.96
VIT_02s0087g00650.t01	Wine grape	cytosol	25.3	29.3
Bra027601.1-P	Field mustard	nucleus, plastid	27.32	29.24
PGSC0003DMT400010431	Potato	nucleus	33.22	28.55
Solyc06g069280.2.1	Tomato	nucleus	32.72	27.91
CDY13062	Canola	nucleus, plastid	18.04	25.6

Protein Annotations

MapMan:16.8.2.2.3	Gene3D:2.30.30.100	InterPro:DFDF	InterPro:FDF_dom	InterPro:FFD_box	EnsemblPlantsGene:GSMUA_Achr2G07060_001
EnsemblPlants:GSMUA_Achr2P07060_001	EnsemblPlants:GSMUA_Achr2T07060_001	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768	InterPro:LSM_dom_sf
InterPro:Lsm14-like_N	UniProt:M0S5U7	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51513
PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182
InterPro:TFG_box	UniParc:UPI0002958309	SEG:seg	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G07060_001]

Coordinates

chr2:+:11674750..11681647

Molecular Weight (calculated)

63757.4 Da

IEP (calculated)

7.876

GRAVY (calculated)

-0.609

Length

593 amino acids

Sequence
(BLAST)

001: MAVSETARSG SSADSYIGSL ISLTSKSEIR YEGVLYSINT QESSIGLQNV RSFGTEGRKK DGPQIPPSDK IYEYILFRGS DIKDLQVKSS PPVQSTSINN
101: DPAIIQSQYL RPASTYTSTP SVGSGSIADL SSHTAQSGLA SSTFQGSLPL YQPGGGLGTW GSSPTPPTAN GSGLAMPPLY WQGYYPQSSG LPHLQQPTLL
201: QPPPGLPIPH SMPLPFQYPG VNPSFQSGSQ NLPEIRPLPH GTPTPTSGPL PSMMDPSSAS TLSLETTSTL LHNRTPVTTV PATTFSISLP LVPPLTSNFE
301: KTAPMPQSMS SVVSSKPNTE PGSTMAHLSV SQPVPSAVVS SSSSQVEKPV GLVTPGQLLQ TGSSMLPSSQ PLQTSQTDAD AKTLEDKSKP LLHEPSCSSA
401: AEAMEPILSI PKSTMQKSNG AALHNYYNRG RGRGRGRGRG NEHSRPVTNF TEDFDFMAMN EKFNKDEVWG HLGKNKAHWR DNHGELIEDE SDYILEEDDE
501: ALKLVTKPVY VKDDFFDTLS CATLDHGTRG GRTRYSEQLK IDTETFGDFR RHRPARGGGR GFRGGGRARG SYGGRGYGYF NRGRGYGHPH HTS

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.