Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68331 | Canola | nucleus, plastid | 90.27 | 88.72 |
| VIT_02s0087g00680.t01 | Wine grape | cytosol | 11.09 | 67.86 |
| AT5G45330.1 | Thale cress | nucleus, plastid | 56.23 | 50.61 |
| CDY70855 | Canola | plastid | 22.76 | 46.99 |
| Solyc08g075300.2.1 | Tomato | nucleus, plastid | 27.04 | 43.85 |
| Zm00001d051566_P001 | Maize | nucleus | 7.39 | 42.22 |
| CDY13062 | Canola | nucleus, plastid | 24.51 | 30.14 |
| KRH76455 | Soybean | nucleus | 30.74 | 28.01 |
| CDY51127 | Canola | nucleus | 31.52 | 27.69 |
| CDY20530 | Canola | nucleus | 31.91 | 27.24 |
| CDY36091 | Canola | nucleus | 31.52 | 27.14 |
| GSMUA_Achr2P07060_001 | Banana | nucleus | 31.13 | 26.98 |
| GSMUA_Achr1P20740_001 | Banana | nucleus | 30.54 | 26.66 |
| CDY55955 | Canola | nucleus | 30.74 | 26.51 |
| Os01t0111200-01 | Rice | nucleus | 30.16 | 25.0 |
| GSMUA_Achr9P00760_001 | Banana | nucleus | 29.18 | 24.96 |
| HORVU3Hr1G000880.1 | Barley | nucleus | 30.54 | 23.79 |
| KRH39773 | Soybean | endoplasmic reticulum | 27.24 | 23.77 |
| TraesCS3A01G006100.1 | Wheat | nucleus | 29.57 | 22.93 |
| EES02617 | Sorghum | nucleus, plastid | 29.38 | 22.81 |
| Zm00001d040142_P001 | Maize | nucleus, plastid | 28.6 | 22.72 |
| Zm00001d008439_P001 | Maize | plasma membrane | 28.6 | 22.65 |
| TraesCS3D01G004500.1 | Wheat | plastid | 29.18 | 22.59 |
| Zm00001d027310_P001 | Maize | nucleus, plastid | 11.87 | 19.55 |
Protein Annotations
| Gene3D:2.30.30.100 | MapMan:35.1 | EnsemblPlants:CDX87795 | ProteinID:CDX87795 | ProteinID:CDX87795.1 | InterPro:DFDF |
| InterPro:FDF_dom | InterPro:FFD_box | EnsemblPlantsGene:GSBRNA2T00146917001 | InterPro:IPR025761 | InterPro:IPR025762 | InterPro:LSM_dom_sf |
| InterPro:Lsm14-like_N | PFAM:PF09532 | PFAM:PF12701 | PFscan:PS51512 | PFscan:PS51513 | PANTHER:PTHR13586 |
| PANTHER:PTHR13586:SF3 | SMART:SM01199 | SMART:SM01271 | SUPFAM:SSF50182 | UniParc:UPI0004EAF434 | SEG:seg |
Description
BnaC02g31540D
Coordinates
chrLK031851:+:1626750..1629487
Molecular Weight (calculated)
55466.1 Da
IEP (calculated)
6.765
GRAVY (calculated)
-0.663
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MASESSQSSS PSPGDTFIGS FISLISKSEI RYEGILYHLN VHDSTLGLKK VRSCGTEGRK KDGPQVPPSD AVYDYILFRG SDIKDLQVNP SPSVQSRKDI
101: QSEKDISQSS QSRPAVSSPP TGYDRGYGLG RGGQWVHTPA LTSNPVPTTL HSPVPLGDGG SLTESPASMP MPTPSFVQGN KLASTGLPLG MMQHAVSSSS
201: TKHNDQAHIV DMFASPIMGL VDDTTKVVTH TPDVASNLAY SSNPSPLGQA QLRTPPGLAS SPTNLSPLSA PYIQNTYPIA PQAVGKGVYD SQINHLNRST
301: PYTLPAVTSD SAPVIPDPLS SSPQSFFGME LLQSNPASVG VPSRSLATTH QAPLLPLPVS AHQSWTPSSS AEFTEEFDFE AMNDKFNKSE LWGFLGKNNQ
401: TNHTEQTAVE PSEEGKTKPA YKKDDFFDTI SCNRLDRTAR SGQQQQHIQF PDHMRQDPQN HFQRPLQPQP GQGAYLAAQT NYHGGYNNNN NDYSNSGYGY
501: YSGGGRGRGR NTHF
101: QSEKDISQSS QSRPAVSSPP TGYDRGYGLG RGGQWVHTPA LTSNPVPTTL HSPVPLGDGG SLTESPASMP MPTPSFVQGN KLASTGLPLG MMQHAVSSSS
201: TKHNDQAHIV DMFASPIMGL VDDTTKVVTH TPDVASNLAY SSNPSPLGQA QLRTPPGLAS SPTNLSPLSA PYIQNTYPIA PQAVGKGVYD SQINHLNRST
301: PYTLPAVTSD SAPVIPDPLS SSPQSFFGME LLQSNPASVG VPSRSLATTH QAPLLPLPVS AHQSWTPSSS AEFTEEFDFE AMNDKFNKSE LWGFLGKNNQ
401: TNHTEQTAVE PSEEGKTKPA YKKDDFFDTI SCNRLDRTAR SGQQQQHIQF PDHMRQDPQN HFQRPLQPQP GQGAYLAAQT NYHGGYNNNN NDYSNSGYGY
501: YSGGGRGRGR NTHF
001: MASESSQSSS PSSSQPPSSV PSPSPGNNVG DTFIGSFISL ISKYEIRYEG ILYHLNVQDS TLGLKNVRSC GTEGRKKDGP QIPPCDKVYD YILFRGSDIK
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F
Arabidopsis Description
DCP5-LDecapping 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FH77]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.