Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0087g00680.t01 | Wine grape | cytosol | 13.4 | 66.67 |
| Zm00001d051566_P001 | Maize | nucleus | 8.61 | 40.0 |
| Solyc08g075300.2.1 | Tomato | nucleus, plastid | 19.86 | 26.18 |
| CDY68331 | Canola | nucleus, plastid | 32.54 | 26.0 |
| CDX87795 | Canola | nucleus | 30.14 | 24.51 |
| AT5G45330.1 | Thale cress | nucleus, plastid | 30.14 | 22.07 |
| CDY51127 | Canola | nucleus | 25.84 | 18.46 |
| GSMUA_Achr2P07060_001 | Banana | nucleus | 25.6 | 18.04 |
| CDY20530 | Canola | nucleus | 25.6 | 17.77 |
| CDY36091 | Canola | nucleus | 25.12 | 17.59 |
| Os01t0111200-01 | Rice | nucleus | 26.08 | 17.58 |
| CDY55955 | Canola | nucleus | 24.64 | 17.28 |
| GSMUA_Achr1P20740_001 | Banana | nucleus | 23.92 | 16.98 |
| Zm00001d027310_P001 | Maize | nucleus, plastid | 12.44 | 16.67 |
| KRH76455 | Soybean | nucleus | 22.25 | 16.49 |
| TraesCS3D01G004500.1 | Wheat | plastid | 25.36 | 15.96 |
| Zm00001d040142_P001 | Maize | nucleus, plastid | 24.4 | 15.77 |
| HORVU3Hr1G000880.1 | Barley | nucleus | 24.88 | 15.76 |
| TraesCS3A01G006100.1 | Wheat | nucleus | 24.88 | 15.69 |
| EES02617 | Sorghum | nucleus, plastid | 24.4 | 15.41 |
| GSMUA_Achr9P00760_001 | Banana | nucleus | 22.01 | 15.31 |
| Zm00001d008439_P001 | Maize | plasma membrane | 23.68 | 15.25 |
| KRH39773 | Soybean | endoplasmic reticulum | 19.62 | 13.92 |
| CDY70855 | Canola | plastid | 4.78 | 8.03 |
Protein Annotations
| EnsemblPlants:CDY13062 | EnsemblPlantsGene:GSBRNA2T00070889001 | Gene3D:2.30.30.100 | InterPro:LSM_dom_sf | InterPro:Lsm14-like_N | PANTHER:PTHR13586 |
| PANTHER:PTHR13586:SF3 | PFAM:PF12701 | ProteinID:CDY13062 | ProteinID:CDY13062.1 | SEG:seg | SMART:SM01271 |
| SUPFAM:SSF50182 | UniParc:UPI0004EE8A02 | UniProt:A0A078FJC6 | MapMan:35.1 | : | : |
Description
BnaA09g17550DBnaA09g17550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJC6]
Coordinates
chrLK032031:+:207361..209125
Molecular Weight (calculated)
44399.1 Da
IEP (calculated)
6.912
GRAVY (calculated)
-0.419
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MASESSQSSS PSPSPSPSMG DTFVGSFISL VSNSEIRYEG ILYHLNVNDS TLGLKNVRSC GTEGRKKDGT QVPPSDTVYD YILFRGSDIK DLQVNPSPSP
101: QPRHQIQREH DVNQSSHVMP AMSFPPPGYD SGYGLGRGAQ WVQTPALSSK PFPATQHSPV PLGFQPPPSN AGTESPASLI GSANSFQAAQ SNAGLSMPMP
201: SFVQGNKLPS TGVPPGMMGQ AVSSSAMKHN DPQIIDMSAS QVMGLVDDAS QVGTRTPDVA SNQSYSSSPL GQAQRHTPPG LASSPLSEAQ LSAPYIQNSY
301: PIAPQAVGNG VYDSLSNHHN RSIPYNIPAM TSHSAPVVPG PFSNSPVSFS DMKPLLQSRQ MVNRGQEMFV ATNPVSVGVP SRSLATWTME CMKNLKHVQV
401: TFATDCSQLV KMVSEPEK
101: QPRHQIQREH DVNQSSHVMP AMSFPPPGYD SGYGLGRGAQ WVQTPALSSK PFPATQHSPV PLGFQPPPSN AGTESPASLI GSANSFQAAQ SNAGLSMPMP
201: SFVQGNKLPS TGVPPGMMGQ AVSSSAMKHN DPQIIDMSAS QVMGLVDDAS QVGTRTPDVA SNQSYSSSPL GQAQRHTPPG LASSPLSEAQ LSAPYIQNSY
301: PIAPQAVGNG VYDSLSNHHN RSIPYNIPAM TSHSAPVVPG PFSNSPVSFS DMKPLLQSRQ MVNRGQEMFV ATNPVSVGVP SRSLATWTME CMKNLKHVQV
401: TFATDCSQLV KMVSEPEK
001: MASESSQSSS PSSSQPPSSV PSPSPGNNVG DTFIGSFISL ISKYEIRYEG ILYHLNVQDS TLGLKNVRSC GTEGRKKDGP QIPPCDKVYD YILFRGSDIK
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F
Arabidopsis Description
DCP5-LDecapping 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FH77]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.