Factsheet for GSMUA_Achr9P00760_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19650_001
GSMUA_Achr4P06150_001
GSMUA_Achr4P12970_001
GSMUA_Achr6P22570_001
GSMUA_Achr7P20530_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	GSMUA_Achr6P22570_001	AT4G29510.1	21798944
AT1G26110.1	GSMUA_Achr4P06150_001	AT4G34230.1	21798944
AT1G26110.1	GSMUA_Achr4P12970_001	AT4G34230.1	21798944
AT1G26110.1	GSMUA_Achr1P19650_001	AT5G06770.1	21798944
AT1G26110.1	GSMUA_Achr7P20530_001	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20740_001	Banana	nucleus	74.38	75.89
KRG93865	Soybean	cytosol	6.16	71.15
VIT_02s0087g00680.t01	Wine grape	cytosol	9.65	69.05
GSMUA_Achr2P07060_001	Banana	nucleus	63.39	64.25
Zm00001d051566_P001	Maize	nucleus	8.99	60.0
VIT_01s0011g02820.t01	Wine grape	nucleus	54.41	53.08
KRH70633	Soybean	nucleus	51.75	50.49
KRH70630	Soybean	nucleus	51.91	50.32
KRH75529	Soybean	nucleus	51.08	50.25
KRH62823	Soybean	nucleus	51.58	50.0
PGSC0003DMT400002103	Potato	nucleus	49.25	49.5
Os01t0111200-01	Rice	nucleus	50.42	48.87
Solyc05g009980.2.1	Tomato	nucleus	48.59	48.75
AT1G26110.1	Thale cress	nucleus	46.59	45.83
Solyc08g075300.2.1	Tomato	nucleus, plastid	24.13	45.74
CDY36091	Canola	nucleus	45.09	45.39
Bra011009.1-P	Field mustard	nucleus	45.09	45.39
CDY55955	Canola	nucleus	44.59	44.97
CDY20530	Canola	nucleus	44.93	44.85
Zm00001d008439_P001	Maize	plasma membrane	48.25	44.68
EES02617	Sorghum	nucleus, plastid	49.08	44.56
CDY51127	Canola	nucleus	42.6	43.76
Zm00001d040142_P001	Maize	nucleus, plastid	46.09	42.81
TraesCS3A01G006100.1	Wheat	nucleus	46.92	42.53
TraesCS3D01G004500.1	Wheat	plastid	46.59	42.17
HORVU3Hr1G000880.1	Barley	nucleus	46.26	42.12
Zm00001d027310_P001	Maize	nucleus, plastid	19.13	36.86
KRH76455	Soybean	nucleus	31.11	33.16
CDY70855	Canola	plastid	12.98	31.33
Solyc03g119850.1.1	Tomato	mitochondrion	21.3	29.49
CDX87795	Canola	nucleus	24.96	29.18
CDY68331	Canola	nucleus, plastid	25.29	29.06
AT5G45330.1	Thale cress	nucleus, plastid	27.29	28.72
VIT_02s0087g00650.t01	Wine grape	cytosol	24.46	28.71
KRH39773	Soybean	endoplasmic reticulum	28.12	28.69
Bra027601.1-P	Field mustard	nucleus, plastid	26.12	28.34
PGSC0003DMT400010431	Potato	nucleus	32.28	28.12
Bra021964.1-P	Field mustard	nucleus, plastid	24.96	28.09
Solyc06g069280.2.1	Tomato	nucleus	31.61	27.34
CDY13062	Canola	nucleus, plastid	15.31	22.01

Protein Annotations

MapMan:16.8.2.2.3	Gene3D:2.30.30.100	InterPro:DFDF	InterPro:FDF_dom	InterPro:FFD_box	EnsemblPlantsGene:GSMUA_Achr9G00760_001
EnsemblPlants:GSMUA_Achr9P00760_001	EnsemblPlants:GSMUA_Achr9T00760_001	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768	InterPro:LSM_dom_sf
InterPro:Lsm14-like_N	UniProt:M0TWD3	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51513
PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182
InterPro:TFG_box	UniParc:UPI000296A277	SEG:seg	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G00760_001]

Coordinates

chr9:-:568374..576360

Molecular Weight (calculated)

64533.3 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.579

Length

601 amino acids

Sequence
(BLAST)

001: MAAETSRSGP SADSYIGSLI SLTSKSEIRY EGILYSINTE ESNIGLSNVR SFGTEGRKKD GPQIPAGEKI YEYILFRGSD IKVHDLIMIH WESYDWFFYL
101: PDLQVKSSLP AQSTPINNDP AIIRSHYAGP TSTSTSVPSA GSGSAADISS HAAQLGLPRS TLHGNLPLYQ PGGGVGTWGP SPMPPTANGS GLVMPPMYWQ
201: GYYAPSSGLP HLQQPSLLQP PGLPIPHAMQ HPFQYPGINP SLPSGSPTLS ELPPMYPHTS ANPTLTSSPL PSMLDPASTN MLSVEASSTL FPDKSPAPSS
301: VSLSVPLVPP LTFNLEKTVA TPQSTPVVGS KPSTVPGSTL AYGSVSEPVP AVVSSSSSQV EKPVAIETQN HSLQTGHPLL PSSQPMQTSH SDADAKALED
401: MSKAFPEPSS NVTAEANEPI LPLPKSTLRK PNGTASHHSY NRGRGRGRGN EYSRRVTKFT EDFDFMAMNE KFNKDEVWGH LGKNKAHLGD NDGELQENEI
501: DNDVEEDEAP KIEIKPGYVK DDFFDSLSCT TLDWGTRGGR TRFSEQLKID TETFGDFARH RPGRGGGHGL RGGGRARGSY RGRGYGYTGR GRGYGQPHHA
601: S

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.