Factsheet for Bra021964.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 1
peroxisome 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68331	Canola	nucleus, plastid	91.95	93.88
VIT_02s0087g00680.t01	Wine grape	cytosol	10.86	69.05
AT5G45330.1	Thale cress	nucleus, plastid	58.05	54.29
Solyc08g075300.2.1	Tomato	nucleus, plastid	26.22	44.16
Bra027601.1-P	Field mustard	nucleus, plastid	45.69	44.04
Zm00001d051566_P001	Maize	nucleus	7.12	42.22
KRH76455	Soybean	nucleus	30.34	28.72
GSMUA_Achr2P07060_001	Banana	nucleus	29.96	26.98
GSMUA_Achr1P20740_001	Banana	nucleus	29.59	26.83
Bra011009.1-P	Field mustard	nucleus	29.96	26.8
Os01t0111200-01	Rice	nucleus	29.03	25.0
GSMUA_Achr9P00760_001	Banana	nucleus	28.09	24.96
KRH39773	Soybean	endoplasmic reticulum	26.4	23.94
HORVU3Hr1G000880.1	Barley	nucleus	29.21	23.64
Zm00001d008439_P001	Maize	plasma membrane	28.28	23.27
TraesCS3A01G006100.1	Wheat	nucleus	28.84	23.23
EES02617	Sorghum	nucleus, plastid	28.65	23.11
TraesCS3D01G004500.1	Wheat	plastid	28.46	22.89
Zm00001d040142_P001	Maize	nucleus, plastid	27.72	22.87
Zm00001d027310_P001	Maize	nucleus, plastid	11.61	19.87

Protein Annotations

Gene3D:2.30.30.100	MapMan:35.1	EnsemblPlantsGene:Bra021964	EnsemblPlants:Bra021964.1	EnsemblPlants:Bra021964.1-P	InterPro:DFDF
InterPro:FDF_dom	InterPro:FFD_box	InterPro:IPR025761	InterPro:IPR025762	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N
UniProt:M4DZL7	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51513	PANTHER:PTHR13586
PANTHER:PTHR13586:SF3	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	UniParc:UPI0002545979	SEG:seg

Description

AT5G45330 (E=7e-056) | unknown protein

Coordinates

chrA02:-:17934214..17936624

Molecular Weight (calculated)

57379.3 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.693

Length

534 amino acids

Sequence
(BLAST)

001: MASESSQSSS PSPSPSSLPS PSPGDTFVGS FISLVSKSEI RYEGILYHLN VHDSTLGLKN VRSCGTEGRK KDGPQVPPSD AVYDYILFRG SDIKDLQVNP
101: SPSVQSRKDI QSEKDINQSS QSRPAVSSPP TGYDRGYGLG RGGQWVHSPA LTSKPAPTTL HSPAPLGDGG SLKESPASMP MPMPMPSFVQ GNKLASTGVP
201: LGMMQHAVSS SSTKHNDQAQ IVDMFASPIM GLVDDTTKVV THTPDVASNL SYSSNPSPLG QAQHRTPPGL ASSPSNLAPL SEASLSAPYI QNTHPTAPQA
301: IGKGVYDSQI NHRNRSTPYT LPAVTSDSAP VIPDPLSSSP QSFFGMELLQ SNTASVGVPS RSLATTHQAP LLPLPVSAHQ SWIPSSSAEF SEEFDFEAMN
401: DKFNKSELWG FLGKNNQTNH TEKTAVEPSE EGKTKPAYKK DDFFDTISCN RLDRTARSGQ QQQQIQFPEH MRQDPQGFGN HFQRPLQPQP GQGAYLAAQT
501: NYHGGYNNNN NDYSNSGYGY YSGGGRGRGR NTHF

Best Arabidopsis Sequence Match ( AT5G45330.1 )
(BLAST)

001: MASESSQSSS PSSSQPPSSV PSPSPGNNVG DTFIGSFISL ISKYEIRYEG ILYHLNVQDS TLGLKNVRSC GTEGRKKDGP QIPPCDKVYD YILFRGSDIK
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F

Arabidopsis Description

DCP5-LDecapping 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FH77]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.