Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 3
- plastid 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051566_P001 | Maize | nucleus | 32.14 | 30.0 |
| Solyc08g075300.2.1 | Tomato | nucleus, plastid | 70.24 | 18.61 |
| CDY13062 | Canola | nucleus, plastid | 66.67 | 13.4 |
| Zm00001d027310_P001 | Maize | nucleus, plastid | 41.67 | 11.22 |
| CDY68331 | Canola | nucleus, plastid | 69.05 | 11.09 |
| CDX87795 | Canola | nucleus | 67.86 | 11.09 |
| Bra021964.1-P | Field mustard | nucleus, plastid | 69.05 | 10.86 |
| AT5G45330.1 | Thale cress | nucleus, plastid | 71.43 | 10.51 |
| Bra027601.1-P | Field mustard | nucleus, plastid | 69.05 | 10.47 |
| GSMUA_Achr2P07060_001 | Banana | nucleus | 73.81 | 10.46 |
| GSMUA_Achr1P20740_001 | Banana | nucleus | 70.24 | 10.02 |
| VIT_01s0011g02820.t01 | Wine grape | nucleus | 71.43 | 9.74 |
| GSMUA_Achr9P00760_001 | Banana | nucleus | 69.05 | 9.65 |
| Os01t0111200-01 | Rice | nucleus | 67.86 | 9.19 |
| HORVU3Hr1G000880.1 | Barley | nucleus | 67.86 | 8.64 |
| TraesCS3D01G004500.1 | Wheat | plastid | 67.86 | 8.58 |
| TraesCS3A01G006100.1 | Wheat | nucleus | 66.67 | 8.45 |
| Zm00001d040142_P001 | Maize | nucleus, plastid | 63.1 | 8.19 |
| Zm00001d008439_P001 | Maize | plasma membrane | 63.1 | 8.17 |
| EES02617 | Sorghum | nucleus, plastid | 64.29 | 8.16 |
| CDY70855 | Canola | plastid | 5.95 | 2.01 |
| VIT_02s0087g00650.t01 | Wine grape | cytosol | 9.52 | 1.56 |
Protein Annotations
| ArrayExpress:VIT_02s0087g00680 | EMBL:FN595769 | EnsemblPlants:VIT_02s0087g00680.t01 | EnsemblPlantsGene:VIT_02s0087g00680 | Gene3D:2.30.30.100 | InterPro:LSM_dom_sf |
| InterPro:Lsm14-like_N | PANTHER:PTHR13586 | PANTHER:PTHR13586:SF3 | PFAM:PF12701 | ProteinID:CCB52222 | ProteinID:CCB52222.1 |
| SMART:SM01271 | SUPFAM:SSF50182 | UniParc:UPI000210962A | UniProt:F6HJ25 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2:-:18163348..18168033
Molecular Weight (calculated)
9420.2 Da
IEP (calculated)
8.987
GRAVY (calculated)
-0.432
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MATEPSADSY VGSFITLISK CEIRYEGVLY FLNAQDSTIG LKNVRSYGTE GRKKDGTQIP PSDKVYEFIL FRGSDIKQLK GYGR
001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKM HENLSGGRGR GRGRGAGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TTLDGDEDDD SPTVDEAELP
501: KIEAKPVYNK DDFFDSLSSN TIDRESQNSR PRFSEQRKLD TETFGEFSRF RGGRGGRGGY GRNNGYSRGG YGGRGYGGYG GRGGGGGGYG YGGRGQGRGV
601: SNRTT
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKM HENLSGGRGR GRGRGAGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TTLDGDEDDD SPTVDEAELP
501: KIEAKPVYNK DDFFDSLSSN TIDRESQNSR PRFSEQRKLD TETFGEFSRF RGGRGGRGGY GRNNGYSRGG YGGRGYGGYG GRGGGGGGYG YGGRGQGRGV
601: SNRTT
Arabidopsis Description
DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.