Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G253700.1 | Wheat | nucleus | 93.98 | 93.98 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 92.69 | 93.49 |
| HORVU6Hr1G069090.1 | Barley | nucleus | 83.23 | 83.95 |
| Os02t0706600-00 | Rice | nucleus | 61.08 | 66.51 |
| Zm00001d017784_P001 | Maize | nucleus | 56.56 | 63.07 |
| KXG30914 | Sorghum | nucleus | 53.98 | 61.82 |
| Zm00001d051573_P001 | Maize | nucleus | 58.28 | 60.76 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 21.72 | 44.89 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 22.58 | 44.68 |
| GSMUA_Achr10P... | Banana | nucleus | 23.44 | 41.13 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 25.59 | 40.89 |
| TraesCS3A01G448000.1 | Wheat | cytosol | 8.17 | 39.58 |
| TraesCS3A01G448100.1 | Wheat | cytosol | 8.17 | 39.58 |
| TraesCS5A01G142700.1 | Wheat | cytosol | 7.96 | 39.36 |
| TraesCS5A01G227200.1 | Wheat | mitochondrion | 7.74 | 38.71 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 22.37 | 35.02 |
| CDX73775 | Canola | nucleus | 15.91 | 34.42 |
| CDX77960 | Canola | nucleus | 16.13 | 34.25 |
| Bra036852.1-P | Field mustard | nucleus | 16.13 | 34.25 |
| CDY37252 | Canola | nucleus | 18.71 | 33.33 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 22.58 | 33.23 |
| CDY62531 | Canola | nucleus | 18.71 | 33.08 |
| CDX90679 | Canola | nucleus | 17.2 | 32.92 |
| AT3G50890.1 | Thale cress | nucleus | 17.42 | 32.53 |
| CDY28987 | Canola | nucleus | 16.99 | 32.24 |
| PGSC0003DMT400009581 | Potato | nucleus | 19.57 | 32.04 |
| CDY70550 | Canola | nucleus | 17.63 | 31.91 |
| Bra037224.1-P | Field mustard | nucleus | 17.63 | 30.94 |
| CDY70108 | Canola | nucleus | 17.63 | 30.94 |
| CDY45419 | Canola | nucleus | 19.14 | 30.9 |
| TraesCS3A01G308700.1 | Wheat | nucleus | 12.26 | 30.81 |
| TraesCS2A01G305400.1 | Wheat | nucleus | 19.35 | 30.51 |
| Solyc04g080490.2.1 | Tomato | nucleus | 18.92 | 30.34 |
| Bra008185.1-P | Field mustard | nucleus | 19.14 | 30.27 |
| AT2G18350.1 | Thale cress | nucleus | 16.99 | 30.15 |
| CDY71124 | Canola | nucleus | 16.56 | 29.96 |
| CDX73152 | Canola | nucleus | 19.14 | 29.77 |
| KRH76785 | Soybean | nucleus | 20.22 | 29.65 |
| KRH69909 | Soybean | nucleus | 21.29 | 29.64 |
| Bra015857.1-P | Field mustard | nucleus | 19.14 | 29.47 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 14.84 | 29.24 |
| KRH08258 | Soybean | nucleus | 20.65 | 29.18 |
| KRH28682 | Soybean | nucleus | 20.65 | 28.57 |
| Solyc02g085160.1.1 | Tomato | nucleus | 17.85 | 28.33 |
| CDX85886 | Canola | nucleus | 17.85 | 28.23 |
| CDX68137 | Canola | nucleus | 17.85 | 27.95 |
| Bra003759.1-P | Field mustard | nucleus | 17.63 | 27.89 |
| AT1G75240.1 | Thale cress | nucleus | 18.49 | 27.83 |
| PGSC0003DMT400009033 | Potato | nucleus | 17.85 | 27.48 |
| Bra012882.1-P | Field mustard | nucleus | 15.05 | 26.42 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 22.37 | 25.94 |
| TraesCS1A01G087700.1 | Wheat | nucleus | 15.48 | 25.17 |
| TraesCS5A01G227100.1 | Wheat | nucleus | 18.49 | 22.45 |
| VIT_04s0023g01880.t01 | Wine grape | nucleus | 18.49 | 19.86 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G273700.1 | EnsemblPlantsGene:TraesCS6A01G273700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | ncoils:Coil |
| PANTHER:PTHR31948 | PANTHER:PTHR31948:SF11 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : |
Description
No Description!
Coordinates
chr6A:+:499954215..499956043
Molecular Weight (calculated)
50514.1 Da
IEP (calculated)
7.176
GRAVY (calculated)
-0.954
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYKRSSHVE EDEELEEEEE EEEEDDEEEE EDEEGAMRDR RHQHQHQHPH HHRHHYTMAP AAAAPPQHLH MQGQAPQVLG SPAAAASSPS SLMEAAAFSR
101: PLLPPNSSLV SSPPPPPPPQ APPGFLLPQH QHPHRRRVDR ERERERTVEA PGEAHRQQQQ QQPQPQHQQR HQEPARNGVL GGGTMPPPPP TLAIVTGGAT
201: RAPGEHGGAS GPEPLPWRYR ECLRNHAARM GAHVLDGCGE FMPSPGDGPA ALACAACGCH RSFHRREPVV LVPSPSPSPA SAVVSPSATP AGANSRLMPL
301: LLAPPHMQQK RPHVPASPMS APAALAESSS EELRAPPPPP PPPQAQAQAA AGGSASAPPA PSKKRFRTKF TPEQKERMLE FAHRVGWRVQ KPDGGVVDAF
401: CAQVGVPRRV LKVWMHNNKH LAKTSATSPP PLPPLHHDPS PPAPHQHHPA PPPHHQQQQQ QQHGA
101: PLLPPNSSLV SSPPPPPPPQ APPGFLLPQH QHPHRRRVDR ERERERTVEA PGEAHRQQQQ QQPQPQHQQR HQEPARNGVL GGGTMPPPPP TLAIVTGGAT
201: RAPGEHGGAS GPEPLPWRYR ECLRNHAARM GAHVLDGCGE FMPSPGDGPA ALACAACGCH RSFHRREPVV LVPSPSPSPA SAVVSPSATP AGANSRLMPL
301: LLAPPHMQQK RPHVPASPMS APAALAESSS EELRAPPPPP PPPQAQAQAA AGGSASAPPA PSKKRFRTKF TPEQKERMLE FAHRVGWRVQ KPDGGVVDAF
401: CAQVGVPRRV LKVWMHNNKH LAKTSATSPP PLPPLHHDPS PPAPHQHHPA PPPHHQQQQQ QQHGA
001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
Arabidopsis Description
ZHD8Zinc-finger homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.