Factsheet for Bra026812.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra010569.1-P
Bra011462.1-P
Bra024382.1-P
Bra027455.1-P
Bra031859.1-P
Bra034407.1-P
Bra037816.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14687.1	Bra034407.1-P	AT1G35670.1	19130088
AT1G14687.1	Bra004399.1-P	AT1G69600.1	16428600
AT1G14687.1	Bra007869.1-P	AT1G69600.1	16428600
AT1G14687.1	Bra011462.1-P	AT4G33690.1	21798944
AT1G14687.1	Bra010569.1-P	AT4G36690.1	21798944
AT1G14687.1	Bra027455.1-P	AT5G42780.1	21798944
AT1G14687.1	Bra024382.1-P	AT5G65410.1	16428600
AT1G14687.1	Bra031859.1-P	AT5G65410.1	16428600
AT1G14687.1	Bra037816.1-P	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33749	Canola	nucleus	100.0	100.0
CDX81662	Canola	nucleus	98.84	98.84
AT1G14687.1	Thale cress	nucleus	83.72	85.71
VIT_01s0011g06360.t01	Wine grape	nucleus	37.79	36.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra026812	EnsemblPlants:Bra026812.1	EnsemblPlants:Bra026812.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD
InterPro:IPR006456	UniProt:M4EDF2	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF16	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002542D8E	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

AT1G14687 (E=2e-072) AtHB32 | AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32); DNA binding / transcription factor

Coordinates

chrA09:-:33822095..33822613

Molecular Weight (calculated)

20332.0 Da

IEP (calculated)

9.446

GRAVY (calculated)

-1.029

Length

172 amino acids

Sequence
(BLAST)

001: MQSSCLYREC MRNHAAKLGS YAVDGCREYS QPSTGDLCAA CGCHRSYHRR IEVQPSGQVT RARFPFTSLR RVKQLARLKW KAAAEDREEQ EEQEEEDTEE
101: TSTEERMTVK RRRKSKFTAE QREAMRDYAA KLGWTLKDKR AVREEISVFC ERIGVTRYLF KTWVNNNKKF YH

Best Arabidopsis Sequence Match ( AT1G14687.1 )
(BLAST)

001: MQSTCVYREC MRNHAAKLGS YAIDGCREYS QPSTGDLCVA CGCHRSYHRR IDVISSPQIN HTRFPFTSLR RVKQLARLKW KTAEERNEEE EDDTEETSTE
101: EKMTVQRRRK SKFTAEQREA MKDYAAKLGW TLKDKRALRE EIRVFCEGIG VTRYHFKTWV NNNKKFYH

Arabidopsis Description

ZHD14ZHD14 [Source:UniProtKB/TrEMBL;Acc:A0A178W745]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.