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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_00s0199g00250.t01
VIT_03s0088g01000.t01
VIT_13s0139g00390.t01
VIT_13s0139g00410.t01
VIT_17s0000g00810.t01
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G14687.1 VIT_18s0072g01030.t01 AT1G35670.1 19130088
AT1G14687.1 VIT_03s0088g01000.t01 AT4G33690.1 21798944
AT1G14687.1 VIT_13s0139g00390.t01 AT4G36690.1 21798944
AT1G14687.1 VIT_13s0139g00410.t01 AT4G36690.1 21798944
AT1G14687.1 VIT_17s0000g00810.t01 AT5G42780.1 21798944
AT1G14687.1 VIT_00s0199g00250.t01 AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G14687.1 Thale cress nucleus 36.67 39.29
Bra026812.1-P Field mustard nucleus 36.11 37.79
CDX81662 Canola nucleus 36.11 37.79
CDY33749 Canola nucleus 36.11 37.79
Protein Annotations
Gene3D:1.10.10.60EntrezGene:100254345wikigene:100254345MapMan:15.5.3.13EMBL:AM431243ProteinID:CAN69254
ProteinID:CAN69254.1ProteinID:CCB50754ProteinID:CCB50754.1UniProt:F6HFA5EMBL:FN595752GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456
EntrezGene:LOC100254345wikigene:LOC100254345PFAM:PD125774PFAM:PF04770PFscan:PS51523PANTHER:PTHR31948
PANTHER:PTHR31948:SF16SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI000210AA2AArrayExpress:VIT_01s0011g06360
EnsemblPlantsGene:VIT_01s0011g06360EnsemblPlants:VIT_01s0011g06360.t01RefSeq:XP_002281698RefSeq:XP_002281698.1InterPro:ZF_HD_homeobox_Cys/His_dimer:
Description
No Description!
Coordinates
chr1:-:6166890..6167547
Molecular Weight (calculated)
20296.1 Da
IEP (calculated)
10.033
GRAVY (calculated)
-0.978
Length
180 amino acids
Sequence
(BLAST)
001: MERVVYGECR RNHAAQLGSH STDGCGEFYP SNPPEAPTRC AACGCHRNFH RRHTIIHLDD EPGKGAHSAG NGGCGVKKSH GVKSHRRRMK EFIDLEESKE
101: EAQVKPRGRG KKPRTMFTAK QKEMMRAFAE SLGWTMTNKE TEAEVKKFCE EVGVTRYIFR TWLNNNKKIY GAAGSSSSRH
Best Arabidopsis Sequence Match ( AT1G14687.1 )
(BLAST)
001: MQSTCVYREC MRNHAAKLGS YAIDGCREYS QPSTGDLCVA CGCHRSYHRR IDVISSPQIN HTRFPFTSLR RVKQLARLKW KTAEERNEEE EDDTEETSTE
101: EKMTVQRRRK SKFTAEQREA MKDYAAKLGW TLKDKRALRE EIRVFCEGIG VTRYHFKTWV NNNKKFYH
Arabidopsis Description
ZHD14ZHD14 [Source:UniProtKB/TrEMBL;Acc:A0A178W745]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.