CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00507
OQU83188

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	EES00507	AT4G15930.1	21798944
AT4G36970.1	OQU83188	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020708_P001	Maize	cytosol	89.34	89.92
Zm00001d005881_P002	Maize	nucleus	52.02	86.1
Os09t0456100-01	Rice	nucleus	68.5	68.39
TraesCS5D01G244300.2	Wheat	nucleus	62.04	62.44
TraesCS5B01G235500.1	Wheat	nucleus	61.55	61.95
HORVU5Hr1G068200.5	Barley	nucleus	61.55	61.95
TraesCS5A01G237300.2	Wheat	nucleus	61.71	61.41
KXG25311	Sorghum	nucleus	47.33	47.26
VIT_07s0031g00610.t01	Wine grape	plastid	26.01	40.05
VIT_18s0001g10420.t01	Wine grape	nucleus	36.83	40.0
PGSC0003DMT400010346	Potato	plastid	24.23	39.68
KXG31173	Sorghum	nucleus	35.7	37.84
KRH66111	Soybean	nucleus	12.12	37.69
Solyc02g090900.2.1	Tomato	plastid	22.94	37.67
Solyc02g064990.2.1	Tomato	nucleus	23.42	37.47
KRH57952	Soybean	nucleus	24.88	37.2
PGSC0003DMT400065490	Potato	nucleus	22.94	36.98
Solyc04g078810.2.1	Tomato	nucleus	34.25	36.68
KRH52008	Soybean	mitochondrion	28.11	36.48
PGSC0003DMT400020667	Potato	nucleus	34.09	36.44
KRH04616	Soybean	nucleus	24.07	36.34
KRH15372	Soybean	nucleus	34.9	35.35
KRH77003	Soybean	nucleus, plastid	23.42	35.28
Bra017801.1-P	Field mustard	plastid	21.49	35.19
KRH05674	Soybean	nucleus	34.25	34.81
KRH28469	Soybean	nucleus, plastid	22.94	34.8
CDY42723	Canola	nucleus, plastid	22.29	34.76
PGSC0003DMT400020663	Potato	nucleus	28.43	34.31
CDX75626	Canola	nucleus, plastid	23.59	34.19
AT4G36970.1	Thale cress	plastid	23.26	33.72
Bra011737.1-P	Field mustard	nucleus, plastid	23.1	33.57
CDY17058	Canola	nucleus, plastid	27.79	33.4
Bra014045.1-P	Field mustard	nucleus, plastid	27.79	33.4
CDX69276	Canola	nucleus, plastid	22.78	33.33
CDY43217	Canola	nucleus	27.63	33.14
AT1G45207.2	Thale cress	nucleus, plastid	29.4	32.79
CDY67768	Canola	plastid	13.57	30.32

Protein Annotations

EnsemblPlants:KXG35763	EnsemblPlantsGene:SORBI_3002G225000	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF21
PFAM:PF03763	ProteinID:KXG35763	ProteinID:KXG35763.1	SEG:seg	UniParc:UPI00081AE1E5	UniProt:A0A1B6QCX5
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:61686449..61692846

Molecular Weight (calculated)

66894.9 Da

IEP (calculated)

9.370

GRAVY (calculated)

-0.719

Length

619 amino acids

Sequence
(BLAST)

001: MRGGGGASGL AFRGVVEEEE EEAVVSAPER PMQRRRQRRR WGEEVDDGYS PSSTGGGGSS CCDSFGCDSP LAGFVRPDGD PDTDLETDGL ATSSSSASAA
101: FTERQDDEAE EVLCGVKEEE WAQVQEPAKN PAAGRATAEC HNQRYRTEAA VLLHGRKGSK QRPASLDLGS PGFHGATFSP SFVIGGVGLM NKGLGASLIR
201: SDVFHSPGTP NYPRHRASVL GCQKGWSSER VPHPSKGSRR YPGSSMAFPY SNGRTLPSKW EDAERWIFSP NSSDALGRTT VAHARRPKSK SGPLGPPGRL
301: GGQYSSVSSV SLLDSGRAGP ITANSPFMAG VLMPEHVCGG KNTNGTYSGR PIGDEISIGR GVKICPLNGG SHPIRTSRVR QRLDYALESS ASLPSTRESI
401: QDEQVEITED SASTIASIIS RKDAATQTSP ELSRSSSPNT RPTFNRSLST EQVKESGSCF SDLDIRDVQM DDRVTLTRWS KKNVTRSSNK NSTNIIEWKE
501: KTVESNSSSW GFAEAKCISK IDREDTKITA WENIQKAKAE AAIQKLVIKL EKKRSSSLDK ILNTLKSAQR KAQVMRERER DAVTANQDGK GSRKAKKRVQ
601: LSKNGQISSL SGCFTCHAF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.