Factsheet for Zm00001d005881_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008330_P001
Zm00001d040291_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	Zm00001d008330_P001	AT4G15930.1	21798944
AT4G36970.1	Zm00001d040291_P001	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020387_P001	Maize	nucleus, plastid	12.57	55.29
Zm00001d017576_P001	Maize	nucleus, plastid	12.57	55.29
Zm00001d039978_P001	Maize	nucleus, plastid	12.3	54.12
Zm00001d019245_P001	Maize	nucleus	12.3	54.12
KXG35763	Sorghum	nucleus	86.1	52.02
Zm00001d020708_P001	Maize	cytosol	78.88	47.97
Os09t0456100-01	Rice	nucleus	64.71	39.03
TraesCS5B01G235500.1	Wheat	nucleus	63.37	38.54
TraesCS5D01G244300.2	Wheat	nucleus	62.83	38.21
TraesCS5A01G237300.2	Wheat	nucleus	62.3	37.46
HORVU5Hr1G068200.5	Barley	nucleus	61.5	37.4
Zm00001d010608_P001	Maize	nucleus	15.51	36.02
VIT_07s0031g00610.t01	Wine grape	plastid	35.03	32.59
Zm00001d020329_P001	Maize	plastid	16.04	32.26
PGSC0003DMT400010346	Potato	plastid	31.28	30.95
KRH04616	Soybean	nucleus	33.69	30.73
Zm00001d050017_P001	Maize	nucleus	54.81	30.55
KRH57952	Soybean	nucleus	33.42	30.19
Solyc02g064990.2.1	Tomato	nucleus	30.75	29.72
Solyc02g090900.2.1	Tomato	plastid	29.68	29.44
KRH77003	Soybean	nucleus, plastid	32.35	29.44
KRH28469	Soybean	nucleus, plastid	31.82	29.17
PGSC0003DMT400065490	Potato	nucleus	29.14	28.39
KRH52008	Soybean	mitochondrion	35.83	28.09
VIT_18s0001g10420.t01	Wine grape	nucleus	42.78	28.07
Bra011737.1-P	Field mustard	nucleus, plastid	31.02	27.23
CDX75626	Canola	nucleus, plastid	31.02	27.17
Bra017801.1-P	Field mustard	plastid	27.27	26.98
CDY42723	Canola	nucleus, plastid	28.61	26.95
AT4G36970.1	Thale cress	plastid	30.75	26.93
Solyc04g078810.2.1	Tomato	nucleus	39.84	25.78
CDX69276	Canola	nucleus, plastid	29.14	25.77
PGSC0003DMT400020667	Potato	nucleus	39.3	25.39
Zm00001d052157_P006	Maize	plastid	39.04	25.3
KRH15372	Soybean	nucleus	40.11	24.55
KRH05674	Soybean	nucleus	38.5	23.65
CDY17058	Canola	nucleus, plastid	32.35	23.5
Bra014045.1-P	Field mustard	nucleus, plastid	32.35	23.5
CDY43217	Canola	nucleus	32.09	23.26
Zm00001d018179_P015	Maize	nucleus	37.97	22.5
PGSC0003DMT400020663	Potato	nucleus	30.48	22.22
AT1G45207.2	Thale cress	nucleus, plastid	32.09	21.62
CDY67768	Canola	plastid	15.24	20.58
KRH66111	Soybean	nucleus	10.16	19.1

Protein Annotations

EnsemblPlants:Zm00001d005881_P002	EnsemblPlants:Zm00001d005881_T002	EnsemblPlantsGene:Zm00001d005881	EntrezGene:100279723	InterPro:Remorin_C	PANTHER:PTHR31471
PANTHER:PTHR31471:SF21	PFAM:PF03763	ProteinID:ONM22302.1	ProteinID:ONM22304.1	ProteinID:ONM22306.1	ProteinID:ONM22307.1
ProteinID:ONM22309.1	ProteinID:ONM22310.1	ProteinID:ONM22312.1	SEG:seg	UniParc:UPI0002210C9E	UniProt:A0A096PQL5
MapMan:35.2	:	:	:	:	:

Description

Remorin family protein

Coordinates

chr2:+:191713265..191717244

Molecular Weight (calculated)

40820.2 Da

IEP (calculated)

10.240

GRAVY (calculated)

-0.677

Length

374 amino acids

Sequence
(BLAST)

001: MAFSYSNGRT LPSKWEDAER WIFSPNSSDM RGRTTVAHGR RPKSKSGPLG PPGRLGGQYS SVSSVSLLDS ERVGPITSNS HFSAGVLMPG HVCGGKNTNG
101: AYSGRPIGDE INIGEGVRIC PLNGGSHPIR TPRVRKRLDS AVESSASLPS TQESIQDEQV EITEDSASTI ACIISRKDVA TQTSPELSRS SSPNNRPTFN
201: RSLSTEQMKE RGSCFSDLDI RDVQMDDRVT LTRWSKQNVT RLPNKNSTNI IEWKEKAVES KSLSWGFAEA KCISKIGRED TKITAWESIQ KAKAEAAIQK
301: LMIKMEKKGS SSLDKILNTL KSAQRKAQVM LEHELDAVTA NQDGKGSRKA KKGAQRSKNG QISSLSGCFT CHAF

Best Arabidopsis Sequence Match ( AT1G45207.2 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAAWKEEFE VKKDDESQNL DSARSSFSVA LRECQERRSR SEALAKKLDY QRTVSLDLSN VTSTSPRVVN VKRASVSTNK SSVFPSPGTP TYLHSMQKGW
201: SSERVPLRSN GGRSPPNAGF LPLYSGRTVP SKWEDAERWI VSPLAKEGAA RTSFGASHER RPKAKSGPLG PPGFAYYSLY SPAVPMVHGG NMGGLTASSP
301: FSAGVLPETV SSRGSTTAAF PQRIDPSMAR SVSIHGCSET LASSSQDDIH ESMKDAATDA QAVSRRDMAT QMSPEGSIRF SPERQCSFSP SSPSPLPISE
401: LLNAHSNRAE VKDLQVDEKV TVTRWSKKHR GLYHGNGSKM RDHVHGKATN HEDLTCATEE ARIISWENLQ KAKAEAAIRK LEKYFPQMKL EKKRSSSMEK
501: IMRKVKSAEK RAEEMRRSVL DNRVSTASHG KASSFKRSGK KKIPSLSGCF TCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.