Factsheet for VIT_04s0008g05520.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g00420.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32295.1	VIT_07s0005g00420.t01	AT2G47700.1	21798944
AT4G32295.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT4G32295.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75234	Canola	cytosol	31.26	55.29
AT4G32295.1	Thale cress	cytosol	28.82	54.62
CDX68833	Canola	nucleus	31.04	54.26
CDX72353	Canola	cytosol	29.05	54.13
Bra011335.1-P	Field mustard	nucleus	31.71	53.96
KRH61761	Soybean	nucleus	32.37	53.09
KRH52430	Soybean	nucleus	32.59	53.07
Bra023956.1-P	Field mustard	cytosol	30.16	52.31
CDY13480	Canola	cytosol	30.16	52.31
VIT_11s0016g05510.t01	Wine grape	nucleus	35.03	46.88
Solyc08g059700.1.1	Tomato	nucleus	34.15	45.43
PGSC0003DMT400082721	Potato	nucleus	34.81	44.23
GSMUA_Achr11P...	Banana	nucleus	34.59	40.84
GSMUA_Achr6P20490_001	Banana	mitochondrion	31.26	37.3

Protein Annotations

Gene3D:1.10.246.20	EntrezGene:100266444	wikigene:100266444	MapMan:15.5.53.5.2	EMBL:AM481941	ProteinID:CAN68624
ProteinID:CAN68624.1	ProteinID:CBI21048	ProteinID:CBI21048.3	UniProt:D7SUU9	EMBL:FN595231	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100266444	wikigene:LOC100266444	PANTHER:PTHR35300	UniParc:UPI0001BE1A60
ArrayExpress:VIT_04s0008g05520	EnsemblPlantsGene:VIT_04s0008g05520	EnsemblPlants:VIT_04s0008g05520.t01	RefSeq:XP_002285150	RefSeq:XP_002285150.2	SEG:seg

Description

No Description!

Coordinates

chr4:-:4977381..4979751

Molecular Weight (calculated)

51025.4 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.601

Length

451 amino acids

Sequence
(BLAST)

001: MPRPGPRPYE CVRRAWHSDR HQPIRGSLIQ EIFRVVNEIH SSATKKNKEW QEKLPIVVLK AEEIMYSKAN SEAEYMDLKT LWDRANDAIN TIIRRDESTE
101: TGEFLQPCIE ASLNLGCPQR RASRSQRNNN PRCYLTPSTQ EPISISPSIL ENSPQGNHTT ISQVMSRYAT FIKPSSMSVI QPGLEPHSTA FHNNDCPTSK
201: FLFSSENCPP SGNKCLQMEV YPASNVCAVY PLYDGNQLQC EESQCGFGVQ SHPKSNPMEP AGMGTIQNLF SYAIDPTKKP SQTDFGHVTE NSPKIDCDLS
301: LRLGPLSIPC VSVENSWPQE FEDVGSSCSR EGSKFSDLSP QVDKQFPFFP RGNTDDPLDS CLSKRSSEGE NLNMEATMRK RKAVISYPLE DRQFCCQPKL
401: PYNYLPGRMR NAEMLYLTKC YLWNLSPYDA AYKKDVILVS SICLIKIWVN K

Best Arabidopsis Sequence Match ( AT4G32295.1 )
(BLAST)

001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN

Arabidopsis Description

Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.