Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75234 | Canola | cytosol | 91.09 | 92.16 |
| CDY13480 | Canola | cytosol | 73.64 | 73.08 |
| AT4G32295.1 | Thale cress | cytosol | 65.89 | 71.43 |
| CDX72353 | Canola | cytosol | 66.67 | 71.07 |
| KRH61761 | Soybean | nucleus | 49.61 | 46.55 |
| KRH52430 | Soybean | nucleus | 49.61 | 46.21 |
| CDY45344 | Canola | nucleus | 32.95 | 35.56 |
| CDX77461 | Canola | nucleus | 43.8 | 34.98 |
| CDX85164 | Canola | nucleus | 43.8 | 34.98 |
| CDY18077 | Canola | nucleus | 42.64 | 33.43 |
| GSMUA_Achr11P... | Banana | nucleus | 47.29 | 31.94 |
| Solyc08g059700.1.1 | Tomato | nucleus | 41.47 | 31.56 |
| VIT_04s0008g05520.t01 | Wine grape | nucleus | 54.26 | 31.04 |
| GSMUA_Achr6P20490_001 | Banana | mitochondrion | 44.57 | 30.42 |
| PGSC0003DMT400082721 | Potato | nucleus | 41.86 | 30.42 |
| CDY45343 | Canola | nucleus | 2.33 | 20.0 |
Protein Annotations
| EnsemblPlants:CDX68833 | EnsemblPlantsGene:GSBRNA2T00130554001 | Gene3D:1.10.246.20 | GO:A0A078C137 | PANTHER:PTHR35300 | PANTHER:PTHR35300:SF1 |
| ProteinID:CDX68833 | ProteinID:CDX68833.1 | SEG:seg | UniParc:UPI0004EEE7B2 | MapMan:15.5.53.5.2 | : |
Description
BnaC01g06200D
Coordinates
chrLK031789:+:1487334..1488882
Molecular Weight (calculated)
29509.2 Da
IEP (calculated)
9.541
GRAVY (calculated)
-0.734
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPGPGPRP RPYECIRRVW HSDRHQPIRG LLIQEIFRIV CEIHSQSTKK NTEWQEKLPV VVLRAEEIMY SKANSEAEYM DMNTLLDRTN EAINTIIRLD
101: ETTEKGEFLQ PCIEAALHLG CTPRRASRSQ RNINPRCYLS QDSTKLDNIL SPQYQAFMKQ NNFCPKNLQK WVERCPVSKY SSYPLCYSFM VSSLPRSNNV
201: TDSYKSNKSS KPVIATDATK GSTTFDGCDL SLRLGPLGDI RTPSQKRSKI SSSNNNKS
101: ETTEKGEFLQ PCIEAALHLG CTPRRASRSQ RNINPRCYLS QDSTKLDNIL SPQYQAFMKQ NNFCPKNLQK WVERCPVSKY SSYPLCYSFM VSSLPRSNNV
201: TDSYKSNKSS KPVIATDATK GSTTFDGCDL SLRLGPLGDI RTPSQKRSKI SSSNNNKS
001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
Arabidopsis Description
Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.