Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54950 | Soybean | nucleus | 46.29 | 46.29 |
| Bra015008.1-P | Field mustard | nucleus | 42.14 | 43.96 |
| CDX77461 | Canola | nucleus | 42.14 | 43.96 |
| CDX85164 | Canola | nucleus | 42.14 | 43.96 |
| Bra028356.1-P | Field mustard | nucleus | 40.95 | 41.95 |
| CDY18077 | Canola | nucleus | 40.95 | 41.95 |
| AT3G24150.1 | Thale cress | nucleus | 42.43 | 41.69 |
| CDY45344 | Canola | nucleus | 29.08 | 41.0 |
| KRH20129 | Soybean | mitochondrion, nucleus | 48.66 | 40.69 |
| KRH03673 | Soybean | mitochondrion, nucleus | 48.07 | 38.39 |
| VIT_04s0008g05520.t01 | Wine grape | nucleus | 46.88 | 35.03 |
| PGSC0003DMT400079381 | Potato | nucleus | 49.85 | 34.93 |
| GSMUA_Achr11P... | Banana | nucleus | 38.58 | 34.03 |
| Solyc07g008100.2.1 | Tomato | nucleus | 49.55 | 33.67 |
| GSMUA_Achr6P20490_001 | Banana | mitochondrion | 37.39 | 33.33 |
| CDY45343 | Canola | nucleus | 1.48 | 16.67 |
Protein Annotations
| ArrayExpress:VIT_11s0016g05510 | EMBL:FN595756 | EnsemblPlants:VIT_11s0016g05510.t01 | EnsemblPlantsGene:VIT_11s0016g05510 | EntrezGene:100250879 | EntrezGene:LOC100250879 |
| Gene3D:1.10.246.20 | PANTHER:PTHR35300 | PANTHER:PTHR35300:SF2 | ProteinID:CCB51596 | ProteinID:CCB51596.1 | RefSeq:XP_002282244 |
| RefSeq:XP_002282244.1 | UniParc:UPI0002108A92 | UniProt:F6HHA0 | wikigene:100250879 | wikigene:LOC100250879 | MapMan:15.5.53.5.2 |
Description
No Description!
Coordinates
chr11:+:4911135..4913179
Molecular Weight (calculated)
38064.8 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.614
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPGPRPYE CVRRAWHSDR HQPMRGSIIQ QIFRVVTDTH SSATKKNREW QEKLPIVVLK AEEIMYSKAN SETEYMDLGT LWDRVNDAVN TIIRRDESTE
101: TGELLPPCIE AALNLGCVPV RASRSQRHNN PRSYLTHRTQ EPTSVSPRVL DNAVNERCPQ LQPPSAGNQL TFGRLNMDST HLVLDSDRHV TQNNSLATTR
201: NFHFPYENFP LGSNQSMTVE TNTPLNFGSV YPLYYGTHFQ NEESHLGFQM PETANANTVF VGAPIGTSIA EPSEMGIILQ NLFSSDGTEN VLNKNAQENF
301: RDTCGKEPVA ECDLSLRLGL SSDPCMRKEK WVLFLSK
101: TGELLPPCIE AALNLGCVPV RASRSQRHNN PRSYLTHRTQ EPTSVSPRVL DNAVNERCPQ LQPPSAGNQL TFGRLNMDST HLVLDSDRHV TQNNSLATTR
201: NFHFPYENFP LGSNQSMTVE TNTPLNFGSV YPLYYGTHFQ NEESHLGFQM PETANANTVF VGAPIGTSIA EPSEMGIILQ NLFSSDGTEN VLNKNAQENF
301: RDTCGKEPVA ECDLSLRLGL SSDPCMRKEK WVLFLSK
001: MPRPGPRPYE CVKRAWHSDR HQPIRGSIIR QIFRLAMEAH SAATRKNKEW QEKLPVVVLK AEEIMYSKAN SEEEYTDADT MWNRVNDAID TIIRRDESTE
101: TGPLLPPCVE AALNLGCIAV RASRSQRHSS GRTYLGPKIQ EPVSASTNEP SYHHEYRQQA QQSSTKPSQT VQAAVPVDVL DNSNKRVATP RGYPFLHESM
201: QMHQKPLAIR QGTGPASAPA PAPVNLGSVY PLYYEGNNQT QQADMSFRVP EAPIIIGMPI GIKPSEEATE RVCDLSLRLG ISSEPSTRID VGSSRAYPGR
301: NQEELCLFAE VKKNDRFEWF SNSEGQNSDS RVKKHRTLCG DFL
101: TGPLLPPCVE AALNLGCIAV RASRSQRHSS GRTYLGPKIQ EPVSASTNEP SYHHEYRQQA QQSSTKPSQT VQAAVPVDVL DNSNKRVATP RGYPFLHESM
201: QMHQKPLAIR QGTGPASAPA PAPVNLGSVY PLYYEGNNQT QQADMSFRVP EAPIIIGMPI GIKPSEEATE RVCDLSLRLG ISSEPSTRID VGSSRAYPGR
301: NQEELCLFAE VKKNDRFEWF SNSEGQNSDS RVKKHRTLCG DFL
Arabidopsis Description
Uncharacterized protein At3g24150 [Source:UniProtKB/TrEMBL;Acc:Q0WQ76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.