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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 4
  • mitochondrion 3
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g008100.2.1 Tomato nucleus 94.18 91.33
VIT_11s0016g05510.t01 Wine grape nucleus 34.93 49.85
Bra015008.1-P Field mustard nucleus 30.56 45.51
CDX77461 Canola nucleus 30.56 45.51
CDX85164 Canola nucleus 30.35 45.2
KRH20129 Soybean mitochondrion, nucleus 37.42 44.66
KRH54950 Soybean nucleus 31.18 44.51
AT3G24150.1 Thale cress nucleus 31.39 44.02
Bra028356.1-P Field mustard nucleus 29.94 43.77
CDY18077 Canola nucleus 29.94 43.77
KRH03673 Soybean mitochondrion, nucleus 37.42 42.65
CDY45344 Canola nucleus 19.75 39.75
GSMUA_Achr6P20490_001 Banana mitochondrion 28.48 36.24
GSMUA_Achr11P... Banana nucleus 28.48 35.86
PGSC0003DMT400082721 Potato nucleus 25.99 35.21
CDY45343 Canola nucleus 1.04 16.67
Protein Annotations
EnsemblPlants:PGSC0003DMT400079381EnsemblPlantsGene:PGSC0003DMG400030900EntrezGene:102581466Gene3D:1.10.246.20PANTHER:PTHR35300PANTHER:PTHR35300:SF2
PGSC:PGSC0003DMG400030900RefSeq:XP_006358289.1UniParc:UPI000296A32DUniProt:M1D1R2MapMan:15.5.53.5.2:
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030900]
Coordinates
chr7:+:4375229..4377314
Molecular Weight (calculated)
54354.3 Da
IEP (calculated)
8.764
GRAVY (calculated)
-0.717
Length
481 amino acids
Sequence
(BLAST)
001: MPRPGPRPYE CVRRAWHSDR HQPMRGSIIQ QIFRVVRERH SVVTKKNREW QQKLPVVVLK AEEIMYSKAN SEAEYMDPET LWDRVNDAID TIIRRDETET
101: GQLLPPCVEA ALNLGCIPER ASRSQRNSNP RSYLSPRTQE PHCVPPKVFS RSANELNSNS SLPIRSGNQP LFLRPSNVNT SRLASEFDRP VMPCINNLGS
201: SSSAKAIIIP ESSSSLDMGS VYPLFYGTDL RPEVSTLVLR EPQHNVIVGK PIYPSIVEPA KISCFPSLFP SRRDDLQEKS CQADFRDKTR RVPELDCDLS
301: LRLGLSANSD LQLQQGQTSC IGDFRPSGNS HEGDQFKLMS TSKGKEFTFF PAESANSPSG LPSRLHRAHG NLEGYGHNTE TLFRKHKMPV RPSDGFQERY
401: DVEAVSTSKD KEYPFFFAES ANSPSGLQTG RANLEGEDQN AATLLRKRKM PVHNNMELGQ FLWQDERTLN RFPGQMKRPG L
Best Arabidopsis Sequence Match ( AT3G24150.2 )
(BLAST)
001: MPRPGPRPYE CVKRAWHSDR HQPIRGSIIR QIFRLAMEAH SAATRKNKEW QEKLPVVVLK AEEIMYSKAN SEEEYTDADT MWNRVNDAID TIIRRDESTE
101: TGPLLPPCVE AALNLGCIAV RASRSQRHSS GRTYLGPKIQ EPVSASTNEP SYHHEYRQQA QQSSTKPSQT VQAAVPVDVL DNSNKRVATP RGYPFLHESM
201: QMHQKPLAIR QGTGPASAPA PAPVNLGSVY PLYYEGNNQT QQADMSFRVP EAPIIIGMPI GIKPSEEATE RVCDLSLRLG ISSEPSTRID VGSSRAYPGR
301: NQEELCLFAE VKKNDRFEWF SNSEGQNSDS RVKKHRTLCG DFL
Arabidopsis Description
Uncharacterized protein At3g24150 [Source:UniProtKB/TrEMBL;Acc:Q0WQ76]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.