Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 3
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc07g008100.2.1 | Tomato | nucleus | 94.18 | 91.33 |
VIT_11s0016g05510.t01 | Wine grape | nucleus | 34.93 | 49.85 |
Bra015008.1-P | Field mustard | nucleus | 30.56 | 45.51 |
CDX77461 | Canola | nucleus | 30.56 | 45.51 |
CDX85164 | Canola | nucleus | 30.35 | 45.2 |
KRH20129 | Soybean | mitochondrion, nucleus | 37.42 | 44.66 |
KRH54950 | Soybean | nucleus | 31.18 | 44.51 |
AT3G24150.1 | Thale cress | nucleus | 31.39 | 44.02 |
Bra028356.1-P | Field mustard | nucleus | 29.94 | 43.77 |
CDY18077 | Canola | nucleus | 29.94 | 43.77 |
KRH03673 | Soybean | mitochondrion, nucleus | 37.42 | 42.65 |
CDY45344 | Canola | nucleus | 19.75 | 39.75 |
GSMUA_Achr6P20490_001 | Banana | mitochondrion | 28.48 | 36.24 |
GSMUA_Achr11P... | Banana | nucleus | 28.48 | 35.86 |
PGSC0003DMT400082721 | Potato | nucleus | 25.99 | 35.21 |
CDY45343 | Canola | nucleus | 1.04 | 16.67 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400079381 | EnsemblPlantsGene:PGSC0003DMG400030900 | EntrezGene:102581466 | Gene3D:1.10.246.20 | PANTHER:PTHR35300 | PANTHER:PTHR35300:SF2 |
PGSC:PGSC0003DMG400030900 | RefSeq:XP_006358289.1 | UniParc:UPI000296A32D | UniProt:M1D1R2 | MapMan:15.5.53.5.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030900]
Coordinates
chr7:+:4375229..4377314
Molecular Weight (calculated)
54354.3 Da
IEP (calculated)
8.764
GRAVY (calculated)
-0.717
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPGPRPYE CVRRAWHSDR HQPMRGSIIQ QIFRVVRERH SVVTKKNREW QQKLPVVVLK AEEIMYSKAN SEAEYMDPET LWDRVNDAID TIIRRDETET
101: GQLLPPCVEA ALNLGCIPER ASRSQRNSNP RSYLSPRTQE PHCVPPKVFS RSANELNSNS SLPIRSGNQP LFLRPSNVNT SRLASEFDRP VMPCINNLGS
201: SSSAKAIIIP ESSSSLDMGS VYPLFYGTDL RPEVSTLVLR EPQHNVIVGK PIYPSIVEPA KISCFPSLFP SRRDDLQEKS CQADFRDKTR RVPELDCDLS
301: LRLGLSANSD LQLQQGQTSC IGDFRPSGNS HEGDQFKLMS TSKGKEFTFF PAESANSPSG LPSRLHRAHG NLEGYGHNTE TLFRKHKMPV RPSDGFQERY
401: DVEAVSTSKD KEYPFFFAES ANSPSGLQTG RANLEGEDQN AATLLRKRKM PVHNNMELGQ FLWQDERTLN RFPGQMKRPG L
101: GQLLPPCVEA ALNLGCIPER ASRSQRNSNP RSYLSPRTQE PHCVPPKVFS RSANELNSNS SLPIRSGNQP LFLRPSNVNT SRLASEFDRP VMPCINNLGS
201: SSSAKAIIIP ESSSSLDMGS VYPLFYGTDL RPEVSTLVLR EPQHNVIVGK PIYPSIVEPA KISCFPSLFP SRRDDLQEKS CQADFRDKTR RVPELDCDLS
301: LRLGLSANSD LQLQQGQTSC IGDFRPSGNS HEGDQFKLMS TSKGKEFTFF PAESANSPSG LPSRLHRAHG NLEGYGHNTE TLFRKHKMPV RPSDGFQERY
401: DVEAVSTSKD KEYPFFFAES ANSPSGLQTG RANLEGEDQN AATLLRKRKM PVHNNMELGQ FLWQDERTLN RFPGQMKRPG L
001: MPRPGPRPYE CVKRAWHSDR HQPIRGSIIR QIFRLAMEAH SAATRKNKEW QEKLPVVVLK AEEIMYSKAN SEEEYTDADT MWNRVNDAID TIIRRDESTE
101: TGPLLPPCVE AALNLGCIAV RASRSQRHSS GRTYLGPKIQ EPVSASTNEP SYHHEYRQQA QQSSTKPSQT VQAAVPVDVL DNSNKRVATP RGYPFLHESM
201: QMHQKPLAIR QGTGPASAPA PAPVNLGSVY PLYYEGNNQT QQADMSFRVP EAPIIIGMPI GIKPSEEATE RVCDLSLRLG ISSEPSTRID VGSSRAYPGR
301: NQEELCLFAE VKKNDRFEWF SNSEGQNSDS RVKKHRTLCG DFL
101: TGPLLPPCVE AALNLGCIAV RASRSQRHSS GRTYLGPKIQ EPVSASTNEP SYHHEYRQQA QQSSTKPSQT VQAAVPVDVL DNSNKRVATP RGYPFLHESM
201: QMHQKPLAIR QGTGPASAPA PAPVNLGSVY PLYYEGNNQT QQADMSFRVP EAPIIIGMPI GIKPSEEATE RVCDLSLRLG ISSEPSTRID VGSSRAYPGR
301: NQEELCLFAE VKKNDRFEWF SNSEGQNSDS RVKKHRTLCG DFL
Arabidopsis Description
Uncharacterized protein At3g24150 [Source:UniProtKB/TrEMBL;Acc:Q0WQ76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.