Factsheet for VIT_13s0019g04580.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0097g00530.t01
VIT_04s0008g06800.t01
VIT_10s0042g01070.t01
VIT_13s0158g00140.t01
VIT_14s0066g01280.t01
VIT_16s0013g00240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54826.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT3G54826.1	VIT_13s0158g00140.t01	AT3G63460.1	21798944
AT3G54826.1	VIT_10s0042g01070.t01	AT4G19700.1	21798944
AT3G54826.1	VIT_03s0097g00530.t01	AT5G09590.1	22841711
AT3G54826.1	VIT_04s0008g06800.t01	AT5G10810.1	21798944
AT3G54826.1	VIT_16s0013g00240.t01	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34848	Soybean	mitochondrion	53.65	54.79
GSMUA_Achr4P04340_001	Banana	mitochondrion	52.6	53.72
KRG91929	Soybean	mitochondrion	51.56	52.38
PGSC0003DMT400069831	Potato	mitochondrion	53.12	50.25
Solyc05g053250.2.1	Tomato	mitochondrion	52.6	49.75
Os02t0819700-01	Rice	mitochondrion	47.4	48.4
Zm00001d018501_P001	Maize	mitochondrion	43.23	44.38
TraesCS6B01G435000.1	Wheat	mitochondrion	43.75	43.52
TraesCS6D01G380400.1	Wheat	mitochondrion	43.75	42.0
Bra003197.1-P	Field mustard	mitochondrion	40.62	41.49
CDY07518	Canola	mitochondrion	40.62	41.27
CDX67612	Canola	mitochondrion	40.62	41.27
AT3G54826.1	Thale cress	mitochondrion, plastid	47.92	41.26
Bra007101.1-P	Field mustard	mitochondrion	39.06	38.27
EES07768	Sorghum	mitochondrion	44.27	35.42
HORVU6Hr1G091500.1	Barley	mitochondrion	42.71	34.6
TraesCS6A01G395100.1	Wheat	plastid	43.23	34.44
CDX73445	Canola	plastid	40.1	33.33
CDX78266	Canola	plastid	39.58	32.9

Protein Annotations

EntrezGene:100261593	wikigene:100261593	MapMan:35.2	ProteinID:CCB56164	ProteinID:CCB56164.1	UniProt:F6HNE5
EMBL:FN595998	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150
GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0030150	GO:GO:0046872	GO:GO:0050821
GO:GO:0051087	InterPro:IPR007853	EntrezGene:LOC100261593	wikigene:LOC100261593	InterPro:Mt_import_TIM15	PFAM:PF05180
PFscan:PS51501	PANTHER:PTHR20922	PANTHER:PTHR20922:SF13	TIGR:TC53593	TIGR:TC66940	UniParc:UPI00015C9A5F
ArrayExpress:VIT_13s0019g04580	EnsemblPlantsGene:VIT_13s0019g04580	EnsemblPlants:VIT_13s0019g04580.t01	unigene:Vvi.4239	RefSeq:XP_002271854	RefSeq:XP_002271854.1
InterPro:Znf_DNL-typ	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:6016735..6020297

Molecular Weight (calculated)

21198.9 Da

IEP (calculated)

5.363

GRAVY (calculated)

-0.502

Length

192 amino acids

Sequence
(BLAST)

001: MAARLLQRIG RSFLGPKHPQ TPIIKEPSWQ FLPSASAAFT RDQFYRRGLG TQVEPTNYAN EDEEKCEAGS LNLNSDSADD VSQVKSDDNS AVKYTAMSNL
101: KTSSRHDLAM IFTCKVCETR SVKTACRESY ERGVVVVRCD GCSNLHLIAD RLGWFGEPGS IEDFLDARGE EVKKGSADTL NLTLEDLAGM KP

Best Arabidopsis Sequence Match ( AT3G54826.1 )
(BLAST)

001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE

Arabidopsis Description

Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.