Factsheet for VIT_13s0158g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23909	Soybean	cytosol	11.92	72.38
KRH23912	Soybean	cytosol	60.24	72.35
Solyc01g088020.2.1	Tomato	extracellular	72.79	71.17
KRH39898	Soybean	nucleus	73.79	70.64
CDY11476	Canola	plastid	39.95	67.23
AT3G63460.1	Thale cress	cytosol	66.15	65.85
GSMUA_AchrUn_...	Banana	extracellular	14.01	64.98
KRH15712	Soybean	mitochondrion, plastid	10.37	64.77
CDX76700	Canola	cytosol	64.42	64.48
CDX93907	Canola	cytosol	64.7	64.23
CDX79419	Canola	cytosol	64.51	64.16
Bra007745.1-P	Field mustard	cytosol	64.15	64.15
Bra007747.1-P	Field mustard	cytosol	63.88	63.88
Bra003525.1-P	Field mustard	cytosol	64.24	63.83
CDX67919	Canola	cytosol	64.33	63.81
GSMUA_Achr3P08600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.51	62.08
GSMUA_Achr8P22150_001	Banana	cytosol	60.15	58.55
Bra016539.1-P	Field mustard	cytosol	48.04	57.89
KXG36842	Sorghum	plasma membrane	58.87	57.41
CDX96696	Canola	cytosol	48.68	57.22
AT1G18830.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.32	57.07
Os07t0657200-01	Rice	plastid	58.51	57.05
GSMUA_AchrUn_...	Banana	mitochondrion	41.77	56.88
CDX83811	Canola	cytosol	48.04	56.41
Zm00001d022378_P003	Maize	cytosol	57.87	56.08
TraesCS2A01G132900.1	Wheat	cytosol	56.87	55.07
TraesCS2B01G156400.3	Wheat	golgi	56.96	55.01
TraesCS2D01G135000.1	Wheat	cytosol	56.69	54.89
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	9.74	53.23
Zm00001d007075_P007	Maize	plasma membrane	57.69	52.88
Zm00001d011587_P001	Maize	nucleus	8.46	50.54
Zm00001d037286_P001	Maize	nucleus	7.83	50.0
Zm00001d034411_P001	Maize	nucleus	7.73	49.42
Zm00001d015774_P001	Maize	mitochondrion	8.1	44.95
HORVU6Hr1G025750.1	Barley	cytosol	4.19	43.4
Zm00001d051619_P001	Maize	peroxisome	2.82	40.26
Zm00001d019612_P001	Maize	plastid	16.2	37.4

Protein Annotations

Gene3D:1.20.940.10	Gene3D:1.25.40.1030	EntrezGene:100263684	wikigene:100263684	Gene3D:2.130.10.10	MapMan:22.4.1.2
InterPro:ACE1_Sec16_Sec31	ProteinID:CCB51818	ProteinID:CCB51818.1	ncoils:Coil	UniProt:F6HHX2	EMBL:FN595762
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100263684	wikigene:LOC100263684	PFAM:PF12931	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR13923	PANTHER:PTHR13923:SF11	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC64529	UniParc:UPI0002108AAA
ArrayExpress:VIT_13s0158g00140	EnsemblPlantsGene:VIT_13s0158g00140	EnsemblPlants:VIT_13s0158g00140.t01	unigene:Vvi.6593	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002272290	RefSeq:XP_002272290.1	RefSeq:XP_003633541
RefSeq:XP_003633541.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:21037497..21052924

Molecular Weight (calculated)

119429.0 Da

IEP (calculated)

4.847

GRAVY (calculated)

-0.313

Length

1099 amino acids

Sequence
(BLAST)

0001: MAGAVDLSFS SSANLEIFKL DFQSDDQDLS LVGESPSSER FNRLSWGKNG SGSEEFALGL IAGGLVDGNI DVWNPLKLIR SEASESALVG HLSRHKGPVR
0101: GLEFNAIAPN LLASGADEGE ICIWDLAAPA EPSHFPPLKG SGSANQGEIS FLSWNSKVQH ILASTSYNGT TVVWDLKKQK PVISFSDSNR RRCSVLQWNP
0201: DVATQLVVAS DEDNSPALRL WDMRNTITPV KEFVGHTKGV IAMSWCPIDS SYLLTCAKDN RTICWDTISG EIVCELPAGT NWNFDIHWYP KIPGVISASS
0301: FDGKIGIYNI EGCSRFGIGE NEFGAAPLKA PKWYKRPAGV SFGFGGKLVS FHTKSSAAGA STGGSEVHVH DLVTEQSLVT RSSEFEAAVQ HGERSSLKAL
0401: CDRKSQESES SDDRETWGFL KVMFEDDGTA RSKLLTHLGF DMVNEEKDTV QNDLSQEVNA LGLEESTAEK VAYVEEKETT IFPSDNGEDF FNNLPSPKAD
0501: TPLSTSVNNF VVEETATVEQ MQQEVDGQEE SADPAFDECV QRALVVGDYK GAVAQCMAVN KMADALVIAH VGGSSLWEST RDQYLKMSRS PYLKVVSAMV
0601: NNDLMSLVNT RPLKSWKETL ALLCTFAPRE EWTMLCDTLA SKLMAFGNTL AATLCYICAG NIDKTVEIWS RSLTAEHEGK SYVDVLQDLM EKTIVLALAT
0701: GQKRFSASLY KLVEKYSEIL ASQGLLKTAM EYLKLLGSDE LSPELVILRD RIALSTEPEK EVPKTMPFDN SQGLAYGADQ SSYGVVDSSQ HYYQETAPTQ
0801: MQSSVPGSPY GDNYQQPFGT SYGSRGYVPP APYQPAPQPH MFLPSQAPQV PQENFAQPPV TSQPAVRPFV PATPPVLRNV EQYQQPTLGS QLYPGATNST
0901: YQSGPPGAGS LGSVTSHVGT VPGHKLPQVV APTPTQRGFM PVNSGVVQRP GMGPMQPPSP TQQAPVQPAI TPAAPPPTIQ TVDTSNVPAQ QRPVVATLTR
1001: LFNETSEALG GSRANPAKKR EIEDNSRKIG ALLAKLNSGD ISKNAADKLV QLCQALDNGD FGTALQIQVL LTTSEWDECN FWLATLKRMI KTRQNVRLS

Best Arabidopsis Sequence Match ( AT3G63460.1 )
(BLAST)

0001: MACIKGVGRS ASVALAPDAP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDRDLPLVGE IPSSERFNRL AWGRNGSGSE EFALGLIAGG LVDGNIDLWN
0101: PLSLIGSQPS ENALVGHLSV HKGPVRGLEF NAISSNLLAS GADDGEICIW DLLKPSEPSH FPLLKGSGSA TQGEISFISW NRKVQQILAS TSYNGTTVIW
0201: DLRKQKPIIN FADSVRRRCS VLQWNPNVTT QIMVASDDDS SPTLKLWDMR NIMSPVREFT GHQRGVIAME WCPSDSSYLL TCAKDNRTIC WDTNTAEIVA
0301: ELPAGNNWNF DVHWYPKIPG VISASSFDGK IGIYNIEGCS RYGVEENNFG TAPLKAPKWY KRPVGASFGF GGKLVSCHAR APAKGTSSIL SEVFLHSLVT
0401: EQSLVSRTSE FEAAIENGDM TSLRGLCEKK SEETESEEEK ETWGLLKIMF EEEGTSRTKL ISHLGFTLPV AEKDQAVDGL SSDLNGIRLE DTAADALDLD
0501: DSNEAAAFAM DNGEDFFNNF PAKPDTPVST SAKDFMPSDT DFSTKGEETQ EMQEEEEESS DPVFDNAIQR ALIVGDYKEA VDQCITANKM ADALVIAHVG
0601: GTALWESTRE KYLKTSSAPY MKVVSAMVNN DLRSLIYTRS HKFWKETLAL LCTFAQGEQW TTLCDALASK LMAAGNTLAA VLCYICAGNV DRTVEIWSRS
0701: LANERDGRSY AELLQDLMEK TLVLALATGN KKFSASLCKL FESYAEILAS QGLLTTAMKY LKVLDSGGLS PELSILRDRI SLSAEPETNT TASGNTQPQS
0801: TMPYNQEPTQ AQPNVLANPY DNQYQQPYTD SYYVPQVSHP PMQQPTMFMP HQAQPAPQPS FTPAPTSNAQ PSMRTTFVPS TPPALKNADQ YQQPTMSSHS
0901: FTGPSNNAYP VPPGPGQYAP SGPSQLGQYP NPKMPQVVAP AAGPIGFTPM ATPGVAPRSV QPASPPTQQA AAQAAPAPAT PPPTVQTADT SNVPAHQKPV
1001: IATLTRLFNE TSEALGGARA NTTKKREIED NSRKLGALFV KLNSGDISKN AADKLAQLCQ ALDNNDFSTA LQIQVLLTTS EWDECNFWLA TLKRMMVKAR
1101: QNVR

Arabidopsis Description

SEC31BProtein transport protein SEC31 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8L611]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.