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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
 extracellular: 22364583
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_13s0158g00140.t01 Wine grape cytosol 71.17 72.79
KRH23909 Soybean cytosol 11.12 69.06
KRH23912 Soybean cytosol 55.43 68.09
CDY11476 Canola plastid 38.52 66.31
KRH39898 Soybean nucleus 67.26 65.85
AT3G63460.1 Thale cress cytosol 62.72 63.86
Bra007745.1-P Field mustard cytosol 62.1 63.51
Bra007747.1-P Field mustard cytosol 61.57 62.97
Bra003525.1-P Field mustard cytosol 61.92 62.93
CDX67919 Canola cytosol 62.01 62.91
CDX79419 Canola cytosol 61.83 62.9
CDX93907 Canola cytosol 61.74 62.69
CDX76700 Canola cytosol 61.21 62.66
GSMUA_Achr3P08600_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 60.05 61.98
GSMUA_AchrUn_... Banana extracellular 12.99 61.6
GSMUA_AchrUn_... Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 10.5 58.71
KRH15712 Soybean mitochondrion, plastid 9.16 58.52
GSMUA_Achr8P22150_001 Banana cytosol 58.63 58.37
Bra016539.1-P Field mustard cytosol 46.89 57.79
AT1G18830.1 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 49.73 57.69
CDX96696 Canola cytosol 47.6 57.22
CDX83811 Canola cytosol 47.51 57.05
KXG36842 Sorghum plasma membrane 55.6 55.46
Os07t0657200-01 Rice plastid 55.52 55.37
Zm00001d022378_P003 Maize cytosol 55.16 54.67
GSMUA_AchrUn_... Banana mitochondrion 38.97 54.28
TraesCS2A01G132900.1 Wheat cytosol 54.36 53.83
TraesCS2D01G135000.1 Wheat cytosol 54.27 53.74
TraesCS2B01G156400.3 Wheat golgi 54.18 53.51
Zm00001d007075_P007 Maize plasma membrane 54.98 51.54
HORVU6Hr1G025750.1 Barley cytosol 4.54 48.11
Zm00001d011587_P001 Maize nucleus 7.83 47.83
Zm00001d034411_P001 Maize nucleus 7.12 46.51
Zm00001d037286_P001 Maize nucleus 7.12 46.51
Zm00001d015774_P001 Maize mitochondrion 7.38 41.92
Zm00001d051619_P001 Maize peroxisome 2.76 40.26
Zm00001d019612_P001 Maize plastid 14.77 34.87
Protein Annotations
Gene3D:1.20.940.10Gene3D:1.25.40.1030Gene3D:2.130.10.10MapMan:22.4.1.2InterPro:ACE1_Sec16_Sec31GO:GO:0003674
GO:GO:0005488GO:GO:0005515InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986UniProt:K4AYJ2
PFAM:PF07304PFAM:PF12931ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR13923
PANTHER:PTHR13923:SF11SMART:SM00320InterPro:SRA1-protein/COPII_Sec31SUPFAM:SSF50978EnsemblPlantsGene:Solyc01g088020.2EnsemblPlants:Solyc01g088020.2.1
UniParc:UPI0002763588InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sf
SEG:seg:::::
Description
No Description!
Coordinates
chr1:+:82869301..82882887
Molecular Weight (calculated)
121566.0 Da
IEP (calculated)
4.957
GRAVY (calculated)
-0.312
Length
1124 amino acids
Sequence
(BLAST)
0001: MACVKMVNRS ASAAFAPEAP YLAAGTMAGA VDLSFSSTAN LDIFEVDFVS DDQQLKLTGS IPSSERYNRL SWGKCQSNSE EFSYGIIAGG LVDGNIGLWN
0101: PKPLISNGSE AIESALVGNL SRHKGPVRGL EFNGFTPNLL ASGADEGEIC IWDIAKPSEP SHFPPLKGSG SSTQGEISYV SWNNKVQHIL ASTSLNGTTV
0201: VWDLKKQKPV ISFTDSVRRR CSVLQWHPDV ATQLIVASDE DGSPALRLWD MRNILSPVKE FVGHTKGVIA MSWCPLDSSY LLTCAKDNRT ICWDVVSGEI
0301: VSELPAGTNW NFDVHWYPKC PGVISASSFD GKIGIYNIEG CGRAGDGEGY FGSAPLRAPK WWSKKKSGVS FGFGGKLVSF GSADGPTGPT EVHVHSIVTE
0401: QGLVTRSSEF ETAIQNGEKT SLRVFCEKKF QESESSGERE IWGFLKVMLE EDGDARTKLL SHLGFSLPVE EKDTMQNDIS EQVNALALDE NLSGKEAANN
0501: ENLMHVLDNG EDFFNNLPSP KADTPVSTSV NTFDVGESVD VKDSQPEMDV QEESADTSFD ETVQRALVVG DYKGAVAQCI SANRMADALV IAHVGGASLW
0601: EQTRDQYLKT SHSSYLKVVA AMVNNDLMSL VNTRPLKSWK ETLALLCTFA PQDEWTSLCD TLASRLLAAG ESLPATLCYI CAGNIDKTIE IWSRSLAGKA
0701: DGKSYVDLLQ DLMEKTIVFA LATGQKRFSA SLCKLLEKYA EILASQGLLT TAMEYLKLMG SEELSPELTI LRDRIALSTE PAKDALKSMA FDNSQLHTGS
0801: GYVADQSGYG MADPSQHYYP EQPSKPQPSI SNSPYAENYQ QPFSSSYSGF GAPVPYQPAP QQNIQQPNMF LPTPTPPVPQ GNIAPPPVAT QPAKTSFIPS
0901: NPPALRNVEQ YQQPTLGAQL YPGPANPGYA GGHNVPPAYV PHPSQAGPAL GQKMPQVVAP SQAPRGFMPV NNPVQRPGMA PMQPPSPTQP PQAQPPAAPA
1001: APPPTVQTVD TSNVPAQQKP VIATLTRLFN ETSEALGGSR ANPAKKREIE DNSKKLGALF AKLNSGDISK NAAEKLVQLC QSLDNGDFST ALQIQVLLTT
1101: SDWDECNFWL ATLKRMIKIR QSFR
Best Arabidopsis Sequence Match ( AT3G63460.1 )
(BLAST)
0001: MACIKGVGRS ASVALAPDAP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDRDLPLVGE IPSSERFNRL AWGRNGSGSE EFALGLIAGG LVDGNIDLWN
0101: PLSLIGSQPS ENALVGHLSV HKGPVRGLEF NAISSNLLAS GADDGEICIW DLLKPSEPSH FPLLKGSGSA TQGEISFISW NRKVQQILAS TSYNGTTVIW
0201: DLRKQKPIIN FADSVRRRCS VLQWNPNVTT QIMVASDDDS SPTLKLWDMR NIMSPVREFT GHQRGVIAME WCPSDSSYLL TCAKDNRTIC WDTNTAEIVA
0301: ELPAGNNWNF DVHWYPKIPG VISASSFDGK IGIYNIEGCS RYGVEENNFG TAPLKAPKWY KRPVGASFGF GGKLVSCHAR APAKGTSSIL SEVFLHSLVT
0401: EQSLVSRTSE FEAAIENGDM TSLRGLCEKK SEETESEEEK ETWGLLKIMF EEEGTSRTKL ISHLGFTLPV AEKDQAVDGL SSDLNGIRLE DTAADALDLD
0501: DSNEAAAFAM DNGEDFFNNF PAKPDTPVST SAKDFMPSDT DFSTKGEETQ EMQEEEEESS DPVFDNAIQR ALIVGDYKEA VDQCITANKM ADALVIAHVG
0601: GTALWESTRE KYLKTSSAPY MKVVSAMVNN DLRSLIYTRS HKFWKETLAL LCTFAQGEQW TTLCDALASK LMAAGNTLAA VLCYICAGNV DRTVEIWSRS
0701: LANERDGRSY AELLQDLMEK TLVLALATGN KKFSASLCKL FESYAEILAS QGLLTTAMKY LKVLDSGGLS PELSILRDRI SLSAEPETNT TASGNTQPQS
0801: TMPYNQEPTQ AQPNVLANPY DNQYQQPYTD SYYVPQVSHP PMQQPTMFMP HQAQPAPQPS FTPAPTSNAQ PSMRTTFVPS TPPALKNADQ YQQPTMSSHS
0901: FTGPSNNAYP VPPGPGQYAP SGPSQLGQYP NPKMPQVVAP AAGPIGFTPM ATPGVAPRSV QPASPPTQQA AAQAAPAPAT PPPTVQTADT SNVPAHQKPV
1001: IATLTRLFNE TSEALGGARA NTTKKREIED NSRKLGALFV KLNSGDISKN AADKLAQLCQ ALDNNDFSTA LQIQVLLTTS EWDECNFWLA TLKRMMVKAR
1101: QNVR
Arabidopsis Description
SEC31BProtein transport protein SEC31 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8L611]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.