Factsheet for AT1G18830.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016539.1-P	Field mustard	cytosol	66.05	70.18
CDX96696	Canola	cytosol	66.15	68.56
CDX83811	Canola	cytosol	66.15	68.48
KRH23909	Soybean	cytosol	11.76	62.98
AT3G63460.1	Thale cress	cytosol	65.43	57.43
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	10.94	52.74
HORVU6Hr1G025750.1	Barley	cytosol	5.68	51.89
VIT_13s0158g00140.t01	Wine grape	cytosol	57.07	50.32
Solyc01g088020.2.1	Tomato	extracellular	57.69	49.73
KRH39898	Soybean	nucleus	57.38	48.43
KRH15712	Soybean	mitochondrion, plastid	8.77	48.3
GSMUA_Achr3P08600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	53.66	47.75
GSMUA_AchrUn_...	Banana	extracellular	11.66	47.68
KRH23912	Soybean	cytosol	44.69	47.32
GSMUA_Achr8P22150_001	Banana	cytosol	53.66	46.06
KXG36842	Sorghum	plasma membrane	52.01	44.72
Zm00001d022378_P003	Maize	cytosol	51.81	44.27
Os07t0657200-01	Rice	plastid	50.15	43.12
Zm00001d007075_P007	Maize	plasma membrane	52.22	42.2
TraesCS2D01G135000.1	Wheat	cytosol	49.23	42.03
TraesCS2A01G132900.1	Wheat	cytosol	49.12	41.94
TraesCS2B01G156400.3	Wheat	golgi	49.02	41.74
GSMUA_AchrUn_...	Banana	mitochondrion	33.54	40.27
Zm00001d037286_P001	Maize	nucleus	6.81	38.37
Zm00001d011587_P001	Maize	nucleus	7.22	38.04
Zm00001d034411_P001	Maize	nucleus	6.71	37.79
Zm00001d015774_P001	Maize	mitochondrion	7.02	34.34
Zm00001d051619_P001	Maize	peroxisome	2.48	31.17
Zm00001d019612_P001	Maize	plastid	14.86	30.25

Protein Annotations

Gene3D:1.20.940.10	Gene3D:1.25.40.1030	Gene3D:2.130.10.10	MapMan:22.4.1.2	EntrezGene:838464	ProteinID:AAF27099.1
InterPro:ACE1_Sec16_Sec31	ProteinID:AEE29767.1	ArrayExpress:AT1G18830	EnsemblPlantsGene:AT1G18830	RefSeq:AT1G18830	TAIR:AT1G18830
RefSeq:AT1G18830-TAIR-G	EnsemblPlants:AT1G18830.1	TAIR:AT1G18830.1	Unigene:At.51670	UniProt:F4ICD9	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005794	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016192
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_173317.2	PFAM:PF00400	PFAM:PF12931
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR13923	PANTHER:PTHR13923:SF11	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000034F3A7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

SEC31AProtein transport protein SEC31 homolog A [Source:UniProtKB/Swiss-Prot;Acc:F4ICD9]

Coordinates

chr1:+:6489309..6494271

Molecular Weight (calculated)

106599.0 Da

IEP (calculated)

5.678

GRAVY (calculated)

-0.384

Length

969 amino acids

Sequence
(BLAST)

001: MDCIKSIGRS AFVAIAPESP FIAAGTMAGA VDLSFSSSAN LEIFELDFQS NDRELKLVGQ CQSSERFNRL AWGSYGSGSD GLIAGGLVDG NIGLWNPISS
101: ESGEIAHVRD LSKHKGPVRG LEFNVKSPNQ LASGADDGTV CIWDLANPSK PSHYLKGTGS YMQSEISSLS WNKGFQHVLA STSHNGTTVI WDVNNEKIIT
201: DLKTTVRCSV LQWDPDHFNQ ILVASDEDSS PNVKLLDIRY LQSPVRTFVG HQRGVIAMEW CPSDSLYLLT CGKDNRTICW NTKTGKIVAE LPTGQNWNFD
301: VHWYPKMPGV ISASSVDGKI GIYNLEGCSS YGTENQQHFL FHLLDADPLT APKWWKRPAG ASFGFGGKLI SFNKNLPEAS EVFLHSLATE KSLVNRISKF
401: EAALENGEKT SLRGLCEKKT EEAESEEEKE TWGLLKIMLE EDGNAKTKLR SHLGFSLPSE ENDQTANEPH ATCSSTNVEE TQKVPEPEGE EEESSDPTFD
501: DAIQRSLIVG DYKEAVAQCF SANKMADALV IAHVGGTELW ESTRDKYIRM SNAPYMKVVS AMMNNDLMTY LHTRQPKSWK ETLALICTFA EGDEWISLCD
601: ALASNLMAAG FTLAATLCYI CAGNVDKTVD IWSMSLEKQS AGKSYAECVQ DLMEKTLVLA LTTCNKRVSA SLRKLFESYA EILASQGLIA TAMKFLKLLE
701: SGDFSPELSI LRDRISLYAE PEAANTSAST NTQPKISNPY QEKSFTPAPL SNAQPSRSIT FFPLNPPREL KNADQYQQPT MDYHSFNRSA GPAYNAPPGP
801: GSYRSIHSQV GPYINSKIPQ TVAPPVRPMT PTHQVAVQPE PVAPPPTVQT ADTSNVPAHQ KPIVASLTRL FKETFEPLRG YSRDTPAKKR EAEDNCSRKL
901: GALFSKLNNG DISKNAAEKL TQLCQALDKR DFGAALKIQG LMTSTEWDEC SSWLPTLKKM IVTGRQNVR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.