CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23909	Soybean	cytosol	15.59	98.89
KRH23912	Soybean	cytosol	75.09	94.21
KRH15712	Soybean	mitochondrion, plastid	11.41	74.43
VIT_13s0158g00140.t01	Wine grape	cytosol	70.64	73.79
CDY11476	Canola	plastid	40.07	70.44
Solyc01g088020.2.1	Tomato	extracellular	65.85	67.26
AT3G63460.1	Thale cress	cytosol	63.5	66.03
Bra007747.1-P	Field mustard	cytosol	62.46	65.24
Bra007745.1-P	Field mustard	cytosol	62.37	65.15
CDX76700	Canola	cytosol	62.28	65.12
CDX79419	Canola	cytosol	62.11	64.52
CDX93907	Canola	cytosol	62.02	64.32
Bra003525.1-P	Field mustard	cytosol	61.5	63.83
CDX67919	Canola	cytosol	61.59	63.81
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	10.8	61.69
GSMUA_AchrUn_...	Banana	extracellular	12.46	60.34
GSMUA_Achr3P08600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	56.97	60.06
HORVU6Hr1G025750.1	Barley	cytosol	5.49	59.43
GSMUA_Achr8P22150_001	Banana	cytosol	57.06	58.02
Bra016539.1-P	Field mustard	cytosol	46.08	58.0
AT1G18830.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	48.43	57.38
KXG36842	Sorghum	plasma membrane	56.18	57.23
CDX96696	Canola	cytosol	46.6	57.22
Os07t0657200-01	Rice	plastid	55.49	56.52
CDX83811	Canola	cytosol	45.82	56.2
Zm00001d022378_P003	Maize	cytosol	55.31	56.0
TraesCS2A01G132900.1	Wheat	cytosol	54.36	54.98
TraesCS2D01G135000.1	Wheat	cytosol	54.18	54.8
TraesCS2B01G156400.3	Wheat	golgi	54.09	54.57
GSMUA_AchrUn_...	Banana	mitochondrion	36.93	52.54
Zm00001d007075_P007	Maize	plasma membrane	54.62	52.29
Zm00001d011587_P001	Maize	nucleus	8.01	50.0
Zm00001d037286_P001	Maize	nucleus	7.49	50.0
Zm00001d034411_P001	Maize	nucleus	7.4	49.42
Zm00001d015774_P001	Maize	mitochondrion	7.32	42.42
Zm00001d051619_P001	Maize	peroxisome	2.79	41.56
Zm00001d019612_P001	Maize	plastid	15.42	37.18

Protein Annotations

Gene3D:1.20.940.10	Gene3D:1.25.40.1030	EntrezGene:100803927	Gene3D:2.130.10.10	MapMan:22.4.1.2	InterPro:ACE1_Sec16_Sec31
EMBL:ACUP02006011	EnsemblPlantsGene:GLYMA_09G226400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1L5K0
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH39898	ProteinID:KRH39898	ProteinID:KRH39898.1
PFAM:PF12931	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR13923	PANTHER:PTHR13923:SF11
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023C8888	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:45121337..45131321

Molecular Weight (calculated)

125025.0 Da

IEP (calculated)

4.951

GRAVY (calculated)

-0.297

Length

1148 amino acids

Sequence
(BLAST)

0001: MACIKGVNRS ASVALAPDAP YLAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDQELPLVAE CPSSDRFNRL SWGKNGSGSE DFALGLVAGG LVDGNIDIWN
0101: PLTLIRSESN QSSLVGHLVR HKGPVRGLEF NVIAPNLLAS GAEDGEICIW DLVNPSEPTH FPPLKSTGSA SQGEISFLSW NSKVQHILAS TSYNGTTVVW
0201: DLKKQKPVIS FADSVRRRCS VLQWNPDVAT QLVVASDEDG SPSLRLWDMR NTISPIKEFV GHTRGVIAMS WCPNDSSYLL TCGKDSRTIC WDMISGEIAY
0301: ELPAGTNWNF DVHWYPRIPG VISASSFDGK IGIYNIKGCR QNDIGENDFG AVPLRAPKWY KRPAGVSFGF GGKLVSFHPR ASAAGSPAGA SEVYVHNLVT
0401: ENGLVSRSSE FEAAIQNGER SLLRVLCGKK TEESESEEER ETWGFLKVMF EDDGTARTKL LSHLGFNVPS EAKDTVNDDL SQEVNALGLE DTTVDNTGHV
0501: STNETPIFST DNGEDFFNNL PSPKADTPVS TSAGNFVVAE NANGSKKIQD DVEVEESSDP SFDDSVQHAL VVGDYNGAVM QCISANKWAD ALVIAHVGNA
0601: SLWESTRDQY LKMVRSPYLK IVSAMVSNDL LSLVNTRPLK FWKETLALLC SFAQRDEWTM LCDTLASKLM GAGNTLAATL CYICAGNIDK TVEIWSRSLS
0701: NEHEGKSYVD LLQDLMEKTI VLALATGQKQ FSASLCKLVE KYAEILASQG LLTTAMEYLK LLGSEELSPE LTILKDRIAL STEPEKDFKT TAFEGSQSHS
0801: GSYYGADNSN YNSNYYQEPV PTQVQHGVSG IQYPDSYQQS FDPRYGRGYG APTHTPPQQP LQPNLFVPPQ ATQVAQTPQP TFSNTAVAPP PLRTFDPQTP
0901: PVLRNVERYQ QPTLGSQLYN TTNPPYQPTP PAPSQVALSH GQNLSQVVAP TPNPMGFMPV SGSGNVQRPG MGSIQPPSPP QVQPVQPPPA PPTPPPTLQT
1001: ADTSKVPGHQ MPIVTTLTRL FNETSDALGG SRANPARKRE IEDNSKRLGG LFAKLNSGDI SKNASDKLLQ LCQALDNGDF GTALQIQVNQ LQMQIIVFTC
1101: VNNLHQIYIL AVLLVLQVLL TTTEWDECQS WLGSLKRMIK TRQSVRLS

Best Arabidopsis Sequence Match ( AT3G63460.1 )
(BLAST)

0001: MACIKGVGRS ASVALAPDAP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDRDLPLVGE IPSSERFNRL AWGRNGSGSE EFALGLIAGG LVDGNIDLWN
0101: PLSLIGSQPS ENALVGHLSV HKGPVRGLEF NAISSNLLAS GADDGEICIW DLLKPSEPSH FPLLKGSGSA TQGEISFISW NRKVQQILAS TSYNGTTVIW
0201: DLRKQKPIIN FADSVRRRCS VLQWNPNVTT QIMVASDDDS SPTLKLWDMR NIMSPVREFT GHQRGVIAME WCPSDSSYLL TCAKDNRTIC WDTNTAEIVA
0301: ELPAGNNWNF DVHWYPKIPG VISASSFDGK IGIYNIEGCS RYGVEENNFG TAPLKAPKWY KRPVGASFGF GGKLVSCHAR APAKGTSSIL SEVFLHSLVT
0401: EQSLVSRTSE FEAAIENGDM TSLRGLCEKK SEETESEEEK ETWGLLKIMF EEEGTSRTKL ISHLGFTLPV AEKDQAVDGL SSDLNGIRLE DTAADALDLD
0501: DSNEAAAFAM DNGEDFFNNF PAKPDTPVST SAKDFMPSDT DFSTKGEETQ EMQEEEEESS DPVFDNAIQR ALIVGDYKEA VDQCITANKM ADALVIAHVG
0601: GTALWESTRE KYLKTSSAPY MKVVSAMVNN DLRSLIYTRS HKFWKETLAL LCTFAQGEQW TTLCDALASK LMAAGNTLAA VLCYICAGNV DRTVEIWSRS
0701: LANERDGRSY AELLQDLMEK TLVLALATGN KKFSASLCKL FESYAEILAS QGLLTTAMKY LKVLDSGGLS PELSILRDRI SLSAEPETNT TASGNTQPQS
0801: TMPYNQEPTQ AQPNVLANPY DNQYQQPYTD SYYVPQVSHP PMQQPTMFMP HQAQPAPQPS FTPAPTSNAQ PSMRTTFVPS TPPALKNADQ YQQPTMSSHS
0901: FTGPSNNAYP VPPGPGQYAP SGPSQLGQYP NPKMPQVVAP AAGPIGFTPM ATPGVAPRSV QPASPPTQQA AAQAAPAPAT PPPTVQTADT SNVPAHQKPV
1001: IATLTRLFNE TSEALGGARA NTTKKREIED NSRKLGALFV KLNSGDISKN AADKLAQLCQ ALDNNDFSTA LQIQVLLTTS EWDECNFWLA TLKRMMVKAR
1101: QNVR

Arabidopsis Description

SEC31BProtein transport protein SEC31 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8L611]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.