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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY11476 Canola plastid 52.54 88.82
CDX93907 Canola cytosol 88.59 88.35
Bra007745.1-P Field mustard cytosol 86.78 87.17
Bra007747.1-P Field mustard cytosol 86.78 87.17
CDX79419 Canola cytosol 87.05 86.97
CDX76700 Canola cytosol 86.32 86.79
CDX67919 Canola cytosol 86.68 86.37
Bra003525.1-P Field mustard cytosol 86.5 86.35
KRH23909 Soybean cytosol 13.32 81.22
VIT_13s0158g00140.t01 Wine grape cytosol 65.85 66.15
AT1G18830.1 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 57.43 65.43
KRH39898 Soybean nucleus 66.03 63.5
GSMUA_AchrUn_... Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 11.5 63.18
Solyc01g088020.2.1 Tomato extracellular 63.86 62.72
KRH23912 Soybean cytosol 51.45 62.08
HORVU6Hr1G025750.1 Barley cytosol 5.8 60.38
GSMUA_AchrUn_... Banana extracellular 12.59 58.65
GSMUA_Achr3P08600_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 56.7 57.48
KRH15712 Soybean mitochondrion, plastid 8.88 55.68
GSMUA_Achr8P22150_001 Banana cytosol 56.7 55.45
KXG36842 Sorghum plasma membrane 55.16 54.04
Zm00001d022378_P003 Maize cytosol 55.07 53.62
Os07t0657200-01 Rice plastid 53.99 52.88
TraesCS2D01G135000.1 Wheat cytosol 52.63 51.19
TraesCS2A01G132900.1 Wheat cytosol 52.45 51.01
TraesCS2B01G156400.3 Wheat golgi 52.45 50.88
Zm00001d007075_P007 Maize plasma membrane 54.53 50.21
GSMUA_AchrUn_... Banana mitochondrion 36.14 49.44
Zm00001d034411_P001 Maize nucleus 7.16 45.93
Zm00001d037286_P001 Maize nucleus 7.16 45.93
Zm00001d011587_P001 Maize nucleus 7.52 45.11
Zm00001d015774_P001 Maize mitochondrion 7.34 40.91
Zm00001d051619_P001 Maize peroxisome 2.54 36.36
Zm00001d019612_P001 Maize plastid 15.22 35.29
Protein Annotations
Gene3D:1.20.940.10Gene3D:1.25.40.1030Gene3D:2.130.10.10MapMan:22.4.1.2EntrezGene:825521InterPro:ACE1_Sec16_Sec31
ProteinID:AEE80486.1ArrayExpress:AT3G63460EnsemblPlantsGene:AT3G63460RefSeq:AT3G63460TAIR:AT3G63460RefSeq:AT3G63460-TAIR-G
EnsemblPlants:AT3G63460.1TAIR:AT3G63460.1EMBL:AY099702Unigene:At.22771EMBL:BT008435ProteinID:CAB87799.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005794GO:GO:0005829GO:GO:0006810GO:GO:0008150
GO:GO:0009506GO:GO:0015031GO:GO:0016020GO:GO:0016192InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986RefSeq:NP_851024.1PFAM:PF00400PFAM:PF07304PFAM:PF12931PO:PO:0000005
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR13923PANTHER:PTHR13923:SF11
UniProt:Q8L611SMART:SM00320InterPro:SRA1-protein/COPII_Sec31SUPFAM:SSF50978UniParc:UPI00000A2567InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:
Description
SEC31BProtein transport protein SEC31 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8L611]
Coordinates
chr3:-:23430623..23437367
Molecular Weight (calculated)
119881.0 Da
IEP (calculated)
4.755
GRAVY (calculated)
-0.332
Length
1104 amino acids
Sequence
(BLAST)
0001: MACIKGVGRS ASVALAPDAP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDRDLPLVGE IPSSERFNRL AWGRNGSGSE EFALGLIAGG LVDGNIDLWN
0101: PLSLIGSQPS ENALVGHLSV HKGPVRGLEF NAISSNLLAS GADDGEICIW DLLKPSEPSH FPLLKGSGSA TQGEISFISW NRKVQQILAS TSYNGTTVIW
0201: DLRKQKPIIN FADSVRRRCS VLQWNPNVTT QIMVASDDDS SPTLKLWDMR NIMSPVREFT GHQRGVIAME WCPSDSSYLL TCAKDNRTIC WDTNTAEIVA
0301: ELPAGNNWNF DVHWYPKIPG VISASSFDGK IGIYNIEGCS RYGVEENNFG TAPLKAPKWY KRPVGASFGF GGKLVSCHAR APAKGTSSIL SEVFLHSLVT
0401: EQSLVSRTSE FEAAIENGDM TSLRGLCEKK SEETESEEEK ETWGLLKIMF EEEGTSRTKL ISHLGFTLPV AEKDQAVDGL SSDLNGIRLE DTAADALDLD
0501: DSNEAAAFAM DNGEDFFNNF PAKPDTPVST SAKDFMPSDT DFSTKGEETQ EMQEEEEESS DPVFDNAIQR ALIVGDYKEA VDQCITANKM ADALVIAHVG
0601: GTALWESTRE KYLKTSSAPY MKVVSAMVNN DLRSLIYTRS HKFWKETLAL LCTFAQGEQW TTLCDALASK LMAAGNTLAA VLCYICAGNV DRTVEIWSRS
0701: LANERDGRSY AELLQDLMEK TLVLALATGN KKFSASLCKL FESYAEILAS QGLLTTAMKY LKVLDSGGLS PELSILRDRI SLSAEPETNT TASGNTQPQS
0801: TMPYNQEPTQ AQPNVLANPY DNQYQQPYTD SYYVPQVSHP PMQQPTMFMP HQAQPAPQPS FTPAPTSNAQ PSMRTTFVPS TPPALKNADQ YQQPTMSSHS
0901: FTGPSNNAYP VPPGPGQYAP SGPSQLGQYP NPKMPQVVAP AAGPIGFTPM ATPGVAPRSV QPASPPTQQA AAQAAPAPAT PPPTVQTADT SNVPAHQKPV
1001: IATLTRLFNE TSEALGGARA NTTKKREIED NSRKLGALFV KLNSGDISKN AADKLAQLCQ ALDNNDFSTA LQIQVLLTTS EWDECNFWLA TLKRMMVKAR
1101: QNVR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.