Factsheet for TraesCS2B01G156400.3

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 2
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G132900.1	Wheat	cytosol	95.69	95.95
TraesCS2D01G135000.1	Wheat	cytosol	95.17	95.42
HORVU2Hr1G023350.3	Barley	cytosol, plastid	88.49	92.56
Os07t0657200-01	Rice	plastid	78.38	79.15
KXG36842	Sorghum	plasma membrane	77.06	77.82
Zm00001d022378_P003	Maize	cytosol	75.83	76.1
Zm00001d007075_P007	Maize	plasma membrane	74.69	70.89
GSMUA_AchrUn_...	Banana	extracellular	12.83	61.6
KRH23909	Soybean	cytosol	9.49	59.67
GSMUA_Achr3P08600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	56.33	58.86
VIT_13s0158g00140.t01	Wine grape	cytosol	55.01	56.96
KRH15712	Soybean	mitochondrion, plastid	8.7	56.25
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	9.84	55.72
GSMUA_Achr8P22150_001	Banana	cytosol	55.1	55.54
CDY11476	Canola	plastid	31.37	54.67
KRH23912	Soybean	cytosol	43.94	54.64
Solyc01g088020.2.1	Tomato	extracellular	53.51	54.18
KRH39898	Soybean	nucleus	54.57	54.09
CDX79419	Canola	cytosol	51.49	53.03
Bra007747.1-P	Field mustard	cytosol	50.97	52.78
Bra007745.1-P	Field mustard	cytosol	50.88	52.68
Bra003525.1-P	Field mustard	cytosol	51.05	52.53
CDX67919	Canola	cytosol	51.14	52.53
AT3G63460.1	Thale cress	cytosol	50.88	52.45
CDX76700	Canola	cytosol	50.35	52.19
CDX93907	Canola	cytosol	50.53	51.94
GSMUA_AchrUn_...	Banana	mitochondrion	36.82	51.92
Bra016539.1-P	Field mustard	cytosol	41.39	51.64
CDX96696	Canola	cytosol	42.0	51.12
CDX83811	Canola	cytosol	41.74	50.75
AT1G18830.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	41.74	49.02
TraesCS4B01G277500.1	Wheat	cytosol	6.41	18.25

Protein Annotations

Gene3D:1.20.940.10	Gene3D:1.25.40.1030	Gene3D:2.130.10.10	MapMan:22.4.1.2	InterPro:ACE1_Sec16_Sec31	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF12931
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR13923	PANTHER:PTHR13923:SF11	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS2B01G156400	EnsemblPlants:TraesCS2B01G156400.3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:+:129654535..129663861

Molecular Weight (calculated)

123301.0 Da

IEP (calculated)

4.797

GRAVY (calculated)

-0.347

Length

1138 amino acids

Sequence
(BLAST)

0001: MACIKSAQRA ALTALAPEAP YLAAGTMSGA VDMQFSASAN IEIFSLDFQS DSPDLPLLAA APSPDRFNRL CWSRPGAADG DSFSLGLLAG GLSDGSVAVW
0101: NPLSMISSEG QAEDVMVAQL EKHNGAVTGL EFSELTPNRL ASGGNEGDIC IWDLKNPCEP NVFPPLKNVG SNAQAEISCL TWNPKFQHIL ASASSNGITV
0201: VWDLRTQKPL TSFSDSNRRN CSVLQWNPDM STQLILASDD DNSPSLRVWD VRKTIAPVRE FVGHSKGVIG MSWCPYDSSF LLTCAKDNRT ICWDTVSGEI
0301: ISELPTSSNG NFDIHWYRKI PGVVAASSYD GKIGVHNLEF SSLYAAGDST VGASARPRAA APKWLKCPTG ASFGFGGKLV SFHPAQGTQA GTSEVHVHNL
0401: VIEQSLVSRS TEFEAAMQNR DKSALRSLCD QKSQESLSEE EKETWSFLRV MFEDGDTARS KLLVHLGFNP PEEPTVNATD ELSKTLADTL NLDHGTDIMD
0501: AQFLADNGDD FFNNPQPSET SMAEEPISTN VQEIEKEMPE NIVPSDPSID KSIQHALVVG DYKGAVNQCL AANRMADALV IAHAGGSALW ESTRNQYLKN
0601: SISPYLKVVS AMVGNDLMSF VSTWPLNAWK ETLALLCTFA GKEEWNVLCD TLASRLLTAG DMLAATLCYI CAGNIDKAVE IWSRNLSSED GGKTYVDLLQ
0701: DLMEKTITLA LATGHKRFSA SLSKLVENYA ELLASQGLLK TAMEYLKLMG ADENSDELTI LRDRIAFSTE DNDAIRSSVS EGSANTSYLP NQHSYTPDPS
0801: QNLYQVPQQY NNVQNNTYPE VYPQPPNNRA NVQSNTYPEV YQQTHNAAYS GYAGYQPQPQ PQTHMFVPKN TPVDTQPSPA PLPVPHQTVK TFTPANVPSL
0901: KNPEQYHQAS TLGSQLYTAP ANSSYAPGPP AQFHSGPPTT YHQPAPPSQY QTGPPVPSVP GTNPNQMFTP AVPTNSASRF IPSTNQGFVQ RPGLSPAQPS
1001: SPTQAQPPAQ PTVAPPAPPP TVQTADTSNV SAELRPVIAT LTRLFDETSK ALGGAPAKKR EIEDNSKKIG ALFAKLNTGD ISPNVSSKLI QMCSALDSSD
1101: FATAMQLQIL LTTSDWDECN FWLSSLKRMI KTRQSFRV

Best Arabidopsis Sequence Match ( AT3G63460.1 )
(BLAST)

0001: MACIKGVGRS ASVALAPDAP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDRDLPLVGE IPSSERFNRL AWGRNGSGSE EFALGLIAGG LVDGNIDLWN
0101: PLSLIGSQPS ENALVGHLSV HKGPVRGLEF NAISSNLLAS GADDGEICIW DLLKPSEPSH FPLLKGSGSA TQGEISFISW NRKVQQILAS TSYNGTTVIW
0201: DLRKQKPIIN FADSVRRRCS VLQWNPNVTT QIMVASDDDS SPTLKLWDMR NIMSPVREFT GHQRGVIAME WCPSDSSYLL TCAKDNRTIC WDTNTAEIVA
0301: ELPAGNNWNF DVHWYPKIPG VISASSFDGK IGIYNIEGCS RYGVEENNFG TAPLKAPKWY KRPVGASFGF GGKLVSCHAR APAKGTSSIL SEVFLHSLVT
0401: EQSLVSRTSE FEAAIENGDM TSLRGLCEKK SEETESEEEK ETWGLLKIMF EEEGTSRTKL ISHLGFTLPV AEKDQAVDGL SSDLNGIRLE DTAADALDLD
0501: DSNEAAAFAM DNGEDFFNNF PAKPDTPVST SAKDFMPSDT DFSTKGEETQ EMQEEEEESS DPVFDNAIQR ALIVGDYKEA VDQCITANKM ADALVIAHVG
0601: GTALWESTRE KYLKTSSAPY MKVVSAMVNN DLRSLIYTRS HKFWKETLAL LCTFAQGEQW TTLCDALASK LMAAGNTLAA VLCYICAGNV DRTVEIWSRS
0701: LANERDGRSY AELLQDLMEK TLVLALATGN KKFSASLCKL FESYAEILAS QGLLTTAMKY LKVLDSGGLS PELSILRDRI SLSAEPETNT TASGNTQPQS
0801: TMPYNQEPTQ AQPNVLANPY DNQYQQPYTD SYYVPQVSHP PMQQPTMFMP HQAQPAPQPS FTPAPTSNAQ PSMRTTFVPS TPPALKNADQ YQQPTMSSHS
0901: FTGPSNNAYP VPPGPGQYAP SGPSQLGQYP NPKMPQVVAP AAGPIGFTPM ATPGVAPRSV QPASPPTQQA AAQAAPAPAT PPPTVQTADT SNVPAHQKPV
1001: IATLTRLFNE TSEALGGARA NTTKKREIED NSRKLGALFV KLNSGDISKN AADKLAQLCQ ALDNNDFSTA LQIQVLLTTS EWDECNFWLA TLKRMMVKAR
1101: QNVR

Arabidopsis Description

SEC31BProtein transport protein SEC31 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8L611]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.