Factsheet for Bra016539.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96696	Canola	cytosol	99.45	97.01
AT1G18830.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	70.18	66.05
KRH23909	Soybean	cytosol	12.94	65.19
Bra007747.1-P	Field mustard	cytosol	63.38	52.59
Bra007745.1-P	Field mustard	cytosol	63.16	52.41
Bra003525.1-P	Field mustard	cytosol	62.94	51.9
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	11.4	51.74
KRH15712	Soybean	mitochondrion, plastid	9.32	48.3
VIT_13s0158g00140.t01	Wine grape	cytosol	57.89	48.04
Solyc01g088020.2.1	Tomato	extracellular	57.79	46.89
GSMUA_AchrUn_...	Banana	extracellular	12.06	46.41
HORVU6Hr1G025750.1	Barley	cytosol	5.37	46.23
GSMUA_Achr3P08600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	55.04	46.1
KRH39898	Soybean	nucleus	58.0	46.08
KRH23912	Soybean	cytosol	43.53	43.39
GSMUA_Achr8P22150_001	Banana	cytosol	53.51	43.22
KXG36842	Sorghum	plasma membrane	51.75	41.88
Os07t0657200-01	Rice	plastid	51.64	41.79
TraesCS2A01G132900.1	Wheat	cytosol	51.64	41.5
TraesCS2D01G135000.1	Wheat	cytosol	51.64	41.5
Zm00001d022378_P003	Maize	cytosol	51.54	41.45
TraesCS2B01G156400.3	Wheat	golgi	51.64	41.39
Zm00001d007075_P007	Maize	plasma membrane	51.21	38.95
GSMUA_AchrUn_...	Banana	mitochondrion	33.0	37.3
Zm00001d011587_P001	Maize	nucleus	7.46	36.96
Zm00001d037286_P001	Maize	nucleus	6.8	36.05
Zm00001d034411_P001	Maize	nucleus	6.69	35.47
Zm00001d015774_P001	Maize	mitochondrion	6.69	30.81
Zm00001d019612_P001	Maize	plastid	15.13	28.99
Zm00001d051619_P001	Maize	peroxisome	1.97	23.38

Protein Annotations

Gene3D:1.20.940.10	Gene3D:1.25.40.1030	Gene3D:2.130.10.10	MapMan:22.4.1.2	InterPro:ACE1_Sec16_Sec31	EnsemblPlantsGene:Bra016539
EnsemblPlants:Bra016539.1	EnsemblPlants:Bra016539.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4DJ61	PFAM:PF00400	PFAM:PF12931	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR13923	PANTHER:PTHR13923:SF11	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002546F39	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

AT1G18830 (E=1e-307) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA08:-:18934713..18939328

Molecular Weight (calculated)

100558.0 Da

IEP (calculated)

5.929

GRAVY (calculated)

-0.279

Length

912 amino acids

Sequence
(BLAST)

001: MSCIKRVDRS AYVAMAPEAP FMAAGTMAGA VDLSFSSSSN LEIFELDFNS EDHEMKLLGQ CSSSERFTRL AWGSYGSGSE ETPYGLIAGG LVDGNIGLRN
101: PITLIRSESN ESAHVRYLSK HKGPVRALEF NVISPNQLAS GDDDGTICIW DLANTSEPSH VLKGSGSYTQ GEISSVSWNR EFKHVLASTS YNGTTVIWDV
201: NNKKVITGFK NSESSDRFKG LISCSVLQWD PDNCNQIMIA SDEDSSPSVK LLDIRYPQSP VRTFVGHHRG VIAMEWCPSD SLYLLTCARD NRTIFWNTKT
301: GQIVAELPTT NNSNFDVHWS PKIPGVVSAS SADGNISIYN LEGCSRNGSG ENNLIDAAPL LTAPKWWKRP VSASFGFGGK LVSSNSKLPE ASVVFLHNLA
401: TEQSLVNRIT KFETEIVNGE KTSLMSLCKK KSEETESEEE KETWSLLKIM LEEDGNAKTK LRTHLGFSLP SEDQEHYATY SSENVEEEIS DPLFDDAIQR
501: SLIVGDYKEA VAHCLSANKM ADALVIAHVG GTTLWESTLD KYLKMSNAPY MKVFSAMVNN DLMSLVHTRP AKLWKETLAL ICTFAEGDEW TSLCDALASH
601: LLPSGFTLAA TLCYICAGNV DKTVDIWLRS LEKDNAGESY SERVQDLMEK TIVLALATEN KRFSASLHKL FESYAEILAS QGLLATAIKF LKLLEPGDFS
701: SELSILRERF SQSFTPAPVT NAEPSRTTLV SLNPPPHQQR TMDFHSSTRY TNATYNPPPG LHLNSKIHQT VVQQVELMVP AQRVAVQPPP APVAPPPTVQ
801: TADTSNVPAH QKHIVATLTR LFKETSDTLG PAKKRDIEGI SRKVGSLFAK LNNEDISKHA AEKLSLLCQA LDKHDFVAAL QIQAHLASTE WDECNFWLLP
901: LKQMIKGRQN VR

Best Arabidopsis Sequence Match ( AT1G18830.2 )
(BLAST)

001: MDCIKSIGRS AFVAIAPESP FIAAGTMAGA VDLSFSSSAN LEIFELDFQS NDRELKLVGQ CQSSERFNRL AWGSYGSGSD GLIAGGLVDG NIGLWNPISS
101: ESGEIAHVRD LSKHKGPVRG LEFNVKSPNQ LASGADDGTV CIWDLANPSK PSHYLKGTGS YMQSEISSLS WNKGFQHVLA STSHNGTTVI WDVNNEKIIT
201: DLKTTVRCSV LQWDPDHFNQ ILVASDEDSS PNVKLLDIRY LQSPVRTFVG HQRGVIAMEW CPSDSLYLLT CGKDNRTICW NTKTGKIVAE LPTGQNWNFD
301: VHWYPKMPGV ISASSVDGKI GIYNLEGCSS YGTEVNNLYS DPLTAPKWWK RPAGASFGFG GKLISFNKNL PEASEVFLHS LATEKSLVNR ISKFEAALEN
401: GEKTSLRGLC EKKTEEAESE EEKETWGLLK IMLEEDGNAK TKLRSHLGFS LPSEENDQTA NEPHATCSST NVEETQKVPE PEGEEEESSD PTFDDAIQRS
501: LIVGDYKEAV AQCFSANKMA DALVIAHVGG TELWESTRDK YIRMSNAPYM KVVSAMMNND LMTYLHTRQP KSWKETLALI CTFAEGDEWI SLCDALASNL
601: MAAGFTLAAT LCYICAGNVD KTVDIWSMSL EKQSAGKSYA ECVQDLMEKT LVLALTTCNK RVSASLRKLF ESYAEILASQ GLIATAMKFL KLLESGDFSP
701: ELSILRDRIS LYAEPEAANT SASTNTQPKI SNPYQEKSFT PAPLSNAQPS RSITFFPLNP PRELKNADQY QQPTMDYHSF NRSAGPAYNA PPGPGSYRSI
801: HSQVGPYINS KIPQTVAPPV RPMTPTHQVA VQPEPVAPPP TVQTADTSNV PAHQKPIVAS LTRLFKETFE PLRGYSRDTP AKKREAEDNC SRKLGALFSK
901: LNNGDISKNA AEKLTQLCQA LDKRDFGAAL KIQGLMTSTE WDECSSWLPT LKKMIVTGRQ NVR

Arabidopsis Description

SEC31AProtein transport protein SEC31 homolog A [Source:UniProtKB/Swiss-Prot;Acc:F4ICD9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.