CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96696	Canola	cytosol	92.09	92.19
AT1G18830.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	68.48	66.15
KRH23909	Soybean	cytosol	11.86	61.33
CDY11476	Canola	plastid	40.71	58.35
CDX79419	Canola	cytosol	62.07	52.58
CDX76700	Canola	cytosol	61.54	52.46
CDX67919	Canola	cytosol	61.97	52.35
CDX93907	Canola	cytosol	61.65	52.12
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	10.79	50.25
HORVU6Hr1G025750.1	Barley	cytosol	5.45	48.11
VIT_13s0158g00140.t01	Wine grape	cytosol	56.41	48.04
Solyc01g088020.2.1	Tomato	extracellular	57.05	47.51
KRH15712	Soybean	mitochondrion, plastid	8.76	46.59
GSMUA_AchrUn_...	Banana	extracellular	11.75	46.41
KRH39898	Soybean	nucleus	56.2	45.82
GSMUA_Achr3P08600_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	52.56	45.18
KRH23912	Soybean	cytosol	42.84	43.83
GSMUA_Achr8P22150_001	Banana	cytosol	51.71	42.87
KXG36842	Sorghum	plasma membrane	50.75	42.15
Os07t0657200-01	Rice	plastid	50.75	42.15
TraesCS2A01G132900.1	Wheat	cytosol	50.75	41.85
TraesCS2D01G135000.1	Wheat	cytosol	50.75	41.85
TraesCS2B01G156400.3	Wheat	golgi	50.75	41.74
Zm00001d022378_P003	Maize	cytosol	50.53	41.71
Zm00001d011587_P001	Maize	nucleus	7.8	39.67
Zm00001d007075_P007	Maize	plasma membrane	50.0	39.03
Zm00001d037286_P001	Maize	nucleus	7.16	38.95
Zm00001d034411_P001	Maize	nucleus	7.05	38.37
GSMUA_AchrUn_...	Banana	mitochondrion	32.59	37.79
Zm00001d015774_P001	Maize	mitochondrion	6.94	32.83
Zm00001d019612_P001	Maize	plastid	15.06	29.62
Zm00001d051619_P001	Maize	peroxisome	2.35	28.57

Protein Annotations

Gene3D:1.20.940.10	Gene3D:1.25.40.1030	Gene3D:2.130.10.10	MapMan:22.4.1.2	InterPro:ACE1_Sec16_Sec31	EnsemblPlants:CDX83811
ProteinID:CDX83811	ProteinID:CDX83811.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00139563001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12931
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR13923	PANTHER:PTHR13923:SF11	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EDF6B2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

BnaC08g18340D

Coordinates

chrLK031834:-:571679..576612

Molecular Weight (calculated)

103082.0 Da

IEP (calculated)

5.541

GRAVY (calculated)

-0.305

Length

936 amino acids

Sequence
(BLAST)

001: MSCIKRVDRS AYAAMAPEAP FIAAGTMAGA VDLSFSSSSN LEIFELDFNS EDHEMKLLGQ CSSSERFTRL AWGSYGSGSQ ESPYGCIAGG LVDGNIGLWN
101: PLTLIRAHVR YLSKHKGPVR ALEFNVISPN QLASGDDDDG TVCIWDLADT SEPSHVLKGT GSYTQGEISS VSWNREFKHV LASTSYNGTT VIWDVNNKKV
201: ITGFKNSESS DRFKGLISCS VLQWDPDNCN QIMIASDEDS SPSVKLLDIR YPQSPVRTFS GHHRGVIAME WCPSDSLYLL TCARDNRTIC WNTKTGQIVA
301: ELRTTNNSNF DVHWSPKIPG VVSASSADGN ISIYNLEGCS RNGSGENNLI DAAPLTAPKW WKRPVSASFG FGGKLVSSNS KLPEASVVFL HSLATEQSLV
401: NRITKFETEI ENGEKTSLMS LCKKKSEETE SEEEKETWSL LKIMLEEDGN AKTKLPTHLG FSLPCEDQKD QEHHATYSSE NVEEEISDPL FDDAIQRSLI
501: VGDYKEAVAH CLSANKMADA LVIAHVGGST LWESTLDKYL KMSNAPYMKV ISAMVNNDLM SLVHTRPAKL WKETLALICT FAEGDEWTSL CDALASHLLS
601: SGFTLAATLC YICAGNVDKT VDIWLRGLEK DNAGKSYSER VQDLMEKTVV LALATENKRF SGSLYKLFES YAEILASQGL LATAIKFLKL LEPDDFSSEL
701: SILREQFSQS VYQEPTQTQP NLLISPYNQA QPALQPSFTP APVTNAQPSK TTLVSLNPPP HQQRSMDFHS STIYTNATYN PPPALYLNSK IHQTVVQQVE
801: LMVPAQRVAV QPPPAPVAPP PTVQTADTSN VPAHQKPIVA TLTRLFKETS DTLGPAKKRD IEGISKKVGS LFAKLNNEDI SKHAAEKLSL LCQALDKQDF
901: NAALQIQTHM ASTEWDECNF WLLPLKQMIK GRQNVR

Best Arabidopsis Sequence Match ( AT1G18830.1 )
(BLAST)

001: MDCIKSIGRS AFVAIAPESP FIAAGTMAGA VDLSFSSSAN LEIFELDFQS NDRELKLVGQ CQSSERFNRL AWGSYGSGSD GLIAGGLVDG NIGLWNPISS
101: ESGEIAHVRD LSKHKGPVRG LEFNVKSPNQ LASGADDGTV CIWDLANPSK PSHYLKGTGS YMQSEISSLS WNKGFQHVLA STSHNGTTVI WDVNNEKIIT
201: DLKTTVRCSV LQWDPDHFNQ ILVASDEDSS PNVKLLDIRY LQSPVRTFVG HQRGVIAMEW CPSDSLYLLT CGKDNRTICW NTKTGKIVAE LPTGQNWNFD
301: VHWYPKMPGV ISASSVDGKI GIYNLEGCSS YGTENQQHFL FHLLDADPLT APKWWKRPAG ASFGFGGKLI SFNKNLPEAS EVFLHSLATE KSLVNRISKF
401: EAALENGEKT SLRGLCEKKT EEAESEEEKE TWGLLKIMLE EDGNAKTKLR SHLGFSLPSE ENDQTANEPH ATCSSTNVEE TQKVPEPEGE EEESSDPTFD
501: DAIQRSLIVG DYKEAVAQCF SANKMADALV IAHVGGTELW ESTRDKYIRM SNAPYMKVVS AMMNNDLMTY LHTRQPKSWK ETLALICTFA EGDEWISLCD
601: ALASNLMAAG FTLAATLCYI CAGNVDKTVD IWSMSLEKQS AGKSYAECVQ DLMEKTLVLA LTTCNKRVSA SLRKLFESYA EILASQGLIA TAMKFLKLLE
701: SGDFSPELSI LRDRISLYAE PEAANTSAST NTQPKISNPY QEKSFTPAPL SNAQPSRSIT FFPLNPPREL KNADQYQQPT MDYHSFNRSA GPAYNAPPGP
801: GSYRSIHSQV GPYINSKIPQ TVAPPVRPMT PTHQVAVQPE PVAPPPTVQT ADTSNVPAHQ KPIVASLTRL FKETFEPLRG YSRDTPAKKR EAEDNCSRKL
901: GALFSKLNNG DISKNAAEKL TQLCQALDKR DFGAALKIQG LMTSTEWDEC SSWLPTLKKM IVTGRQNVR

Arabidopsis Description

SEC31AProtein transport protein SEC31 homolog A [Source:UniProtKB/Swiss-Prot;Acc:F4ICD9]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.