Factsheet for VIT_16s0013g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0113g00410.t01
VIT_03s0038g03560.t01
VIT_07s0031g03050.t01
VIT_07s0151g00910.t01
VIT_13s0067g02440.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51110.1	VIT_01s0113g00410.t01	AT2G24550.1	21798944
AT5G51110.1	VIT_03s0038g03560.t01	AT2G47450.1	21798944
AT5G51110.1	VIT_13s0067g02440.t01	AT3G10970.1	21798944
AT5G51110.1	VIT_07s0151g00910.t01	AT4G02720.1	21798944
AT5G51110.1	VIT_07s0031g03050.t01	AT5G08650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33344	Soybean	plastid	63.33	61.57
KRH70391	Soybean	plastid	61.43	60.0
GSMUA_Achr2P18260_001	Banana	plastid	61.43	59.45
CDY32642	Canola	plastid	55.24	53.95
Bra029188.1-P	Field mustard	plastid	54.76	53.49
CDY38850	Canola	plastid	54.76	53.49
AT5G51110.1	Thale cress	plastid	55.24	52.73
CDX71689	Canola	cytosol	25.24	51.46
PGSC0003DMT400013443	Potato	plastid	50.0	49.76
Zm00001d034715_P001	Maize	plastid	50.95	49.08
TraesCS5A01G545700.1	Wheat	plastid	49.05	49.05
TraesCSU01G129700.1	Wheat	plastid	49.52	48.37
EER93165	Sorghum	plastid	48.57	47.89
TraesCS4B01G379500.1	Wheat	plastid	49.52	47.71
Os03t0100200-01	Rice	plastid	45.24	46.8
VIT_10s0003g02770.t01	Wine grape	mitochondrion	25.71	30.68
HORVU4Hr1G090300.6	Barley	plastid	26.19	21.48

Protein Annotations

KEGG:00790+4.2.1.96	MapMan:1.2.1.2.6	EntrezGene:100244293	wikigene:100244293	Gene3D:3.30.1360.20	EMBL:AM482375
ProteinID:CAN70883	ProteinID:CAN70883.1	ProteinID:CCB61169	ProteinID:CCB61169.1	UniProt:F6I2K2	EMBL:FN596738
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006729	GO:GO:0006950	GO:GO:0008124	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0071944	InterPro:IPR036428	EntrezGene:LOC100244293	wikigene:LOC100244293
InterPro:PCD_sf	PFAM:PF01329	PANTHER:PTHR12599	PANTHER:PTHR12599:SF8	InterPro:Pterin_deHydtase	SUPFAM:SSF55248
TIGR:TC59597	TIGR:TC61573	UniParc:UPI00015C84EF	ArrayExpress:VIT_16s0013g00240	EnsemblPlantsGene:VIT_16s0013g00240	EnsemblPlants:VIT_16s0013g00240.t01
unigene:Vvi.1452	RefSeq:XP_002280495	RefSeq:XP_002280495.1	:	:	:

Description

No Description!

Coordinates

chr16:+:5159375..5162468

Molecular Weight (calculated)

23073.1 Da

IEP (calculated)

7.511

GRAVY (calculated)

-0.080

Length

210 amino acids

Sequence
(BLAST)

001: MAMATTTPGL FSLPLSPQPQ ARSFQLIHLA SPTRPRLGRV ALAVGGDLLG DFGARDPFPA EIESKFGEKV LGNLDTEHKI LIPNVSALSL AQQECSPVSG
101: LDPPMTEEDA QKLLRKVVGW RLSDEAGVLK LQCLWKLRDF KCGVELINRI YKVAEAAGHF PNLHLEQPNQ IRAELWTASI GGLSMNDFIV AAKIDEIRTS
201: DLVPKKRIWA

Best Arabidopsis Sequence Match ( AT5G51110.1 )
(BLAST)

001: MAATSSSPPC NISASSLLLR QPSRSILKVF GLLPPVSRNN RKLGRLTVTR SNLAQDFLGD FGARDPYPEE IASQFGDKVL GCQSTEHKIL IPNASVLSLS
101: QLQCSPVSSS QPPLSGDDAR TLLHKVLGWS IVDNEAGGLK IRCMWKVRDF GCGVELINRI HKVAEASGHY PSLHLESPTQ VRAELFTSSI GGLSMNDFIM
201: AAKIDDIKTS DLSPRKRAWA

Arabidopsis Description

ATP1Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU63]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.