Factsheet for VIT_10s0003g02770.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g005510.2.1	Tomato	cytosol	44.32	70.27
KRH42974	Soybean	cytosol	48.3	64.39
KRH21339	Soybean	cytosol	47.16	62.41
AT1G29810.1	Thale cress	mitochondrion	57.39	54.01
CDX99857	Canola	mitochondrion	54.55	52.17
GSMUA_Achr3P31150_001	Banana	mitochondrion	53.98	51.91
Bra032338.1-P	Field mustard	mitochondrion	52.84	50.54
CDY26312	Canola	mitochondrion	52.84	50.54
KRH10960	Soybean	mitochondrion	50.57	49.44
TraesCS6B01G348200.1	Wheat	cytosol	44.32	48.75
OQU93010	Sorghum	mitochondrion	21.59	46.34
CDY35274	Canola	cytosol	30.68	46.15
Bra010809.1-P	Field mustard	cytosol	30.11	45.69
CDX90215	Canola	cytosol	30.11	45.69
HORVU3Hr1G060040.1	Barley	mitochondrion	45.45	45.2
TraesCS3D01G241500.1	Wheat	mitochondrion	44.89	44.63
TraesCS3A01G241300.1	Wheat	mitochondrion	44.32	44.07
TraesCS3B01G269400.1	Wheat	mitochondrion	43.75	43.5
Zm00001d043963_P001	Maize	mitochondrion	46.02	42.63
Os01t0663500-01	Rice	mitochondrion	46.02	42.63
KXG33050	Sorghum	cytosol	47.73	31.0
VIT_16s0013g00240.t01	Wine grape	plastid	30.68	25.71
TraesCS6D01G297400.2	Wheat	cytosol, mitochondrion, nucleus, peroxisome	28.98	24.4
TraesCS6A01G318200.5	Wheat	cytosol	27.27	22.02

Protein Annotations

KEGG:00790+4.2.1.96	EntrezGene:100255626	wikigene:100255626	Gene3D:3.30.1360.20	MapMan:50.4.2	ProteinID:CBI30822
ProteinID:CBI30822.3	UniProt:D7TK00	EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006729	GO:GO:0008124
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR036428	EntrezGene:LOC100255626
wikigene:LOC100255626	InterPro:PCD_sf	PFAM:PF01329	PANTHER:PTHR12599	InterPro:Pterin_deHydtase	SUPFAM:SSF55248
UniParc:UPI0001985911	ArrayExpress:VIT_10s0003g02770	EnsemblPlantsGene:VIT_10s0003g02770	EnsemblPlants:VIT_10s0003g02770.t01	unigene:Vvi.2309	RefSeq:XP_002273897
RefSeq:XP_002273897.1	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:4855823..4864476

Molecular Weight (calculated)

19655.7 Da

IEP (calculated)

9.833

GRAVY (calculated)

-0.247

Length

176 amino acids

Sequence
(BLAST)

001: MARILQFPLT SLFRSLSGAH GRSSIQVTKI LHDRVEVSSN RKSLNGFRTF CTGEDLSIKK CVPCNSNDIR PMTEQAANEL IPKVPGWNLV NETDTLKLNR
101: SWKVKSFTKG LELFQAVADV AEAEGHHPDL HLVGWNNVKI EIWTHAVGGL TENDFILAAK INGLDLQRLL RRKAAT

Best Arabidopsis Sequence Match ( AT1G29810.1 )
(BLAST)

001: MSRLLLPKLF SISRTQVPAA SLFNNLYRRH KRFVHWTSKM STDSVRSSTT GGSASGARTF CSLADLSTKK CVPCNAKDLR AMTEQSAQDL LQKVAGWDLA
101: NDNDTLKLHR SWRVKSFTKG LDFFQRVADI AESEGHHPDL HLVGWNNVKI EIWTHAIGGL TENDFILAAK INELQVEDLL RKKKVAK

Arabidopsis Description

PDL2Pterin-4-alpha-carbinolamine dehydratase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6QJ72]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.