CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
extracellular 1
mitochondrion 2
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010809.1-P	Field mustard	cytosol	100.0	100.0
CDY35274	Canola	cytosol	98.28	97.44
Solyc02g005510.2.1	Tomato	cytosol	49.14	51.35
KRH42974	Soybean	cytosol	46.55	40.91
OQU93010	Sorghum	mitochondrion	27.59	39.02
KRH21339	Soybean	cytosol	43.1	37.59
CDX99857	Canola	mitochondrion	56.9	35.87
CDY26312	Canola	mitochondrion	56.03	35.33
AT1G29810.1	Thale cress	mitochondrion	55.17	34.22
TraesCS6B01G348200.1	Wheat	cytosol	46.55	33.75
GSMUA_Achr3P31150_001	Banana	mitochondrion	50.86	32.24
VIT_10s0003g02770.t01	Wine grape	mitochondrion	45.69	30.11
HORVU3Hr1G060040.1	Barley	mitochondrion	45.69	29.94
TraesCS3D01G241500.1	Wheat	mitochondrion	45.69	29.94
TraesCS3B01G269400.1	Wheat	mitochondrion	45.69	29.94
TraesCS3A01G241300.1	Wheat	mitochondrion	45.69	29.94
Zm00001d043963_P001	Maize	mitochondrion	47.41	28.95
Os01t0663500-01	Rice	mitochondrion	45.69	27.89
KRH10960	Soybean	mitochondrion	42.24	27.22
CDX71689	Canola	cytosol	18.97	21.36
KXG33050	Sorghum	cytosol	46.55	19.93
TraesCS6A01G318200.5	Wheat	cytosol	31.03	16.51
TraesCS6D01G297400.2	Wheat	cytosol, mitochondrion, nucleus, peroxisome	29.31	16.27
CDY38850	Canola	plastid	27.59	14.88
CDY32642	Canola	plastid	27.59	14.88

Protein Annotations

KEGG:00790+4.2.1.96	Gene3D:3.30.1360.20	MapMan:50.4.2	GO:A0A078DM00	EnsemblPlants:CDX90215	ProteinID:CDX90215
ProteinID:CDX90215.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006729	GO:GO:0008124	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00150772001	InterPro:IPR036428	InterPro:PCD_sf
PFAM:PF01329	PANTHER:PTHR12599	MetaCyc:PWY-7158	InterPro:Pterin_deHydtase	SUPFAM:SSF55248	UniParc:UPI00025470D7
SEG:seg	:	:	:	:	:

Description

BnaA08g17690D

Coordinates

chrLK031862:-:674001..674599

Molecular Weight (calculated)

13060.7 Da

IEP (calculated)

7.509

GRAVY (calculated)

-0.108

Length

116 amino acids

Sequence
(BLAST)

001: MAGKACCMLT PELFLSHRLL DGIWLLANDN GTLKLHPSWL VKSFTKGLGF FNRVAKIAEW EGHHPDLLLV GWNNEKIDVW THAIGGLTEN DFICCSDQLA
101: RSGRSSKKEE SFKSIF

Best Arabidopsis Sequence Match ( AT1G29810.1 )
(BLAST)

001: MSRLLLPKLF SISRTQVPAA SLFNNLYRRH KRFVHWTSKM STDSVRSSTT GGSASGARTF CSLADLSTKK CVPCNAKDLR AMTEQSAQDL LQKVAGWDLA
101: NDNDTLKLHR SWRVKSFTKG LDFFQRVADI AESEGHHPDL HLVGWNNVKI EIWTHAIGGL TENDFILAAK INELQVEDLL RKKKVAK

Arabidopsis Description

PDL2Pterin-4-alpha-carbinolamine dehydratase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6QJ72]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.